TERMINATORS OF TRANSCRIPTION WITH RNA-POLYMERASE FROM ESCHERICHIA-COLI - WHAT THEY LOOK LIKE AND HOW TO FIND THEM

被引：108

作者：

BRENDEL, V ^{[1
]}

HAMM, GH ^{[1
]}

TRIFONOV, EN ^{[1
]}

机构：

[1] EUROPEAN MOLEC BIOL LAB, EMBL DATA LIB, D-6900 HEIDELBERG, FED REP GER

来源：

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS | 1986年 / 3卷 / 04期

关键词：

D O I：

10.1080/07391102.1986.10508457

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

We present here a compilation of prokaryotic transcription terminator sequences (ref. 1-152). The compilation includes 49 independent terminators, 52 speculated independent terminators, 27 sites shown to function in vivo, and some 20 proven or speculated rho-dependent terminators. In addition to the well-known features of independent terminators (dyad symmetry and T-run), two consensus sequences are found: CGGG(C/G) upstream and TCTG downstream of the termination point. A subset of the collection of sequences has been used to construct a computer algorithm to locate independent terminators by sequence analysis.

引用

页码：705 / 723

页数：19

共 165 条

[31] A COMPREHENSIVE SET OF SEQUENCE-ANALYSIS PROGRAMS FOR THE VAX [J].

DEVEREUX, J ;

HAEBERLI, P ;

SMITHIES, O .

NUCLEIC ACIDS RESEARCH, 1984, 12 (01) :387-395

[32] ANTI-TERMINATION AND TERMINATION FUNCTIONS OF THE CLONED NUTL, N AND TL1 MODULES OF COLIPHAGE LAMBDA [J].

DRAHOS, D ;

SZYBALSKI, W .

GENE, 1981, 16 (1-3) :261-274

[33]

DROUIN J, 1978, NATURE, V276, P236

[34] THE DISTAL END OF THE RIBOSOMAL-RNA OPERON RRND OF ESCHERICHIA-COLI CONTAINS A TRANSFER RNA1(THR) GENE, 2 5S RIBOSOMAL-RNA GENES AND A TRANSCRIPTION TERMINATOR [J].

DUESTER, GL ;

HOLMES, WM .

NUCLEIC ACIDS RESEARCH, 1980, 8 (17) :3793-3807

[35] THE TRANSCRIPTION TERMINATION SITE AT THE END OF THE EARLY REGION OF BACTERIOPHAGE-T7 DNA [J].

DUNN, JJ ;

STUDIER, FW .

NUCLEIC ACIDS RESEARCH, 1980, 8 (10) :2119-2132

[36] COMPLETE NUCLEOTIDE-SEQUENCE OF BACTERIOPHAGE-T7 DNA AND THE LOCATIONS OF T7 GENETIC ELEMENTS [J].

DUNN, JJ ;

STUDIER, FW .

JOURNAL OF MOLECULAR BIOLOGY, 1983, 166 (04) :477-535

[37] TRANSCRIPTION OF THE UVRD GENE OF ESCHERICHIA-COLI IS CONTROLLED BY THE LEXA REPRESSOR AND BY ATTENUATION [J].

EASTON, AM ;

KUSHNER, SR .

NUCLEIC ACIDS RESEARCH, 1983, 11 (24) :8625-8640

[38]

EBINA Y, 1983, J BIOL CHEM, V258, P7072

[39] SEQUENCE OF LACI GENE [J].

FARABAUGH, PJ .

NATURE, 1978, 274 (5673) :765-769

[40] ESCHERICHIA-COLI PHENYLALANYL-TRANSFER RNA-SYNTHETASE OPERON REGION - EVIDENCE FOR AN ATTENUATION MECHANISM - IDENTIFICATION OF THE GENE FOR THE RIBOSOMAL-PROTEIN L20 [J].

FAYAT, G ;

MAYAUX, JF ;

SACERDOT, C ;

FROMANT, M ;

SPRINGER, M ;

GRUNBERGMANAGO, M ;

BLANQUET, S .

JOURNAL OF MOLECULAR BIOLOGY, 1983, 171 (03) :239-261

← 1 2 3 4 5 6 7 8 9 10 →