The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998

被引:201
作者
Bairoch, A
Apweiler, R
机构
[1] Univ Geneva, Dept Biochem Med, CH-1211 Geneva 4, Switzerland
[2] European Bioinformat Inst, Cambridge CB10 1SD, England
基金
英国惠康基金;
关键词
D O I
10.1093/nar/26.1.38
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
SWISS-PROT (http://www.expasy.ch/) is a curated protein sequence database which strives to provide a high level of annotations (such as the description of the function of a protein, its domains structure, posttranslational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases, Recent developments of the database include: an increase in the number and scope of model organisms; cross-references to two additional databases; a variety of new documentation files and improvements to TrEMBL, a computer annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDS) in the EMBL nucleotide sequence database, except the CDS already included in SWISS-PROT.
引用
收藏
页码:38 / 42
页数:5
相关论文
共 13 条
[1]   A NEW-GENERATION OF INFORMATION-RETRIEVAL TOOLS FOR BIOLOGISTS - THE EXAMPLE OF THE EXPASY WWW SERVER [J].
APPEL, RD ;
BAIROCH, A ;
HOCHSTRASSER, DF .
TRENDS IN BIOCHEMICAL SCIENCES, 1994, 19 (06) :258-260
[2]   The SWISS-PROT protein sequence data bank and its supplement TrEMBL [J].
Bairoch, A ;
Apweller, R .
NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :31-36
[3]   The PROSITE database, its status in 1997 [J].
Bairoch, A ;
Bucher, P ;
Hofmann, K .
NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :217-221
[4]   The ENZYME data bank in 1995 [J].
Bairoch, A .
NUCLEIC ACIDS RESEARCH, 1996, 24 (01) :221-222
[5]  
Bairoch A., 1997, PROTEIN DATA BANK Q, V81, P5
[6]  
BAIROCH A, 1997, SWISS PROT PROTEIN S
[7]   The Mouse Genome Database (MGD), a comprehensive public resource of genetic, phenotypic and genomic data [J].
Blake, JA ;
Richardson, JE ;
Davisson, MT ;
Eppig, JT ;
Battles, J ;
Begley, D ;
Blackburn, R ;
Bradt, D ;
Colby, G ;
Corbani, L ;
Davis, G ;
Doolittle, D ;
Drake, T ;
Frazer, K ;
Gilbert, J ;
Grant, P ;
LennonPierce, M ;
Maltais, L ;
May, M ;
McIntire, M ;
Merriam, J ;
Ormsby, J ;
Palazola, R ;
Ringwald, M ;
Rockwood, S ;
Sharpe, S ;
Shaw, D ;
Reed, D ;
StanleyWalls, M ;
Taylor, L .
NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :85-91
[8]   The Mouse Genome Database (MGD): a community resource. Status and enhancements [J].
Blake, JA ;
Eppig, JT ;
Richardson, JE ;
Davisson, MT .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :130-137
[9]  
ETZOLD T, 1993, COMPUT APPL BIOSCI, V9, P49
[10]   FlyBase: A Drosophila database [J].
Gelbart, WM ;
Crosby, M ;
Matthews, B ;
Rindone, WP ;
Chillemi, J ;
Twombly, SR ;
Emmert, D ;
Ashburner, M ;
Drysdale, RA ;
Whitfield, E ;
Millburn, GH ;
deGrey, A ;
Kaufman, T ;
Matthews, K ;
Gilbert, D ;
Strelets, V .
NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :63-66