A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome

被引:106
作者
Panstruga, R [1 ]
Büschges, R [1 ]
Piffanelli, P [1 ]
Schulze-Lefert, P [1 ]
机构
[1] John Innes Inst, Sainsbury Lab, Norwich NR4 7UH, Norfolk, England
关键词
D O I
10.1093/nar/26.4.1056
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The contiguous DNA sequence of a 60 kb genomic interval of barley chromosome 4HL has been assembled, The region harbours a single and novel gypsy-like retrotransposon, designated BAGY-1. Only three genes appear to reside in the genomic stretch, One predicts a plant homologue of ribophorin I, a subunit of the oligosaccharyltransferase-protein complex located in the rough endoplasmatic reticulum, The second is similar to the Drosophila g1 gene encoding a ring finger protein involved in developmental processes, The observed gene density is similar to 5-fold lower than in the best characterized dicot genome of Arabidopsis but 6- to 10-fold higher than expected from an equidistant gene distribution in the complex barley genome, Our data suggest that the 60 kb genomic interval represents part of a gene island, a seemingly distinctive feature of grass genomes.
引用
收藏
页码:1056 / 1062
页数:7
相关论文
共 35 条
[1]   UNMETHYLATED CPG ISLANDS ASSOCIATED WITH GENES IN HIGHER-PLANT DNA [J].
ANTEQUERA, F ;
BIRD, AP .
EMBO JOURNAL, 1988, 7 (08) :2295-2299
[2]   The distribution of genes in the genomes of Gramineae [J].
Barakat, A ;
Carels, N ;
Bernardi, G .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (13) :6857-6861
[3]   NUCLEAR-DNA AMOUNTS IN ANGIOSPERMS [J].
BENNETT, MD ;
SMITH, JB .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1991, 334 (1271) :309-345
[4]   The contributions of retroelements to plant genome organization, function and evolution [J].
Bennetzen, JL .
TRENDS IN MICROBIOLOGY, 1996, 4 (09) :347-353
[5]   The human genome: Organization and evolutionary history [J].
Bernardi, G .
ANNUAL REVIEW OF GENETICS, 1995, 29 :445-476
[6]   THE DROSOPHILA-MELANOGASTER DEVELOPMENTAL GENE G1 ENCODES A VARIANT ZINC-FINGER-MOTIF PROTEIN [J].
BOUCHARD, ML ;
COTE, S .
GENE, 1993, 125 (02) :205-209
[7]   The barley mlo gene: A novel control element of plant pathogen resistance [J].
Buschges, R ;
Hollricher, K ;
Panstruga, R ;
Simons, G ;
Wolter, M ;
Frijters, A ;
vanDaelen, R ;
vanderLee, T ;
Diergaarde, P ;
Groenendijk, J ;
Topsch, S ;
Vos, P ;
Salamini, F ;
Schulze-Lefert, P .
CELL, 1997, 88 (05) :695-705
[8]   THE GENE DISTRIBUTION OF THE MAIZE GENOME [J].
CARELS, N ;
BARAKAT, A ;
BERNARDI, G .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (24) :11057-11060
[9]   HUMAN RIBOPHORINS-I AND RIBOPHORINS-II - THE PRIMARY STRUCTURE AND MEMBRANE TOPOLOGY OF 2 HIGHLY CONSERVED ROUGH ENDOPLASMIC RETICULUM-SPECIFIC GLYCOPROTEINS [J].
CRIMAUDO, C ;
HORTSCH, M ;
GAUSEPOHL, H ;
MEYER, DI .
EMBO JOURNAL, 1987, 6 (01) :75-82
[10]   CPG ISLANDS AND GENES [J].
CROSS, SH ;
BIRD, AP .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 1995, 5 (03) :309-314