Transition path sampling: Throwing ropes over rough mountain passes, in the dark

被引:1630
作者
Bolhuis, PG
Chandler, D
Dellago, C
Geissler, PL
机构
[1] Univ Amsterdam, Dept Chem Engn, NL-1018 WV Amsterdam, Netherlands
[2] Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[3] Univ Rochester, Dept Chem, Rochester, NY 14627 USA
[4] Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA
关键词
potential surfaces; kinetics; transition states; complex systems; trajectories; basins of attraction; rare events;
D O I
10.1146/annurev.physchem.53.082301.113146
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
This article reviews the concepts and methods of transition path sampling. These methods allow computational studies of rare events without requiring prior knowledge of mechanisms, reaction coordinates, and transition states. Based upon a statistical mechanics of trajectory space, they provide a perspective with which time dependent phenomena, even for systems driven far from equilibrium, can be examined with the same types of importance sampling tools that in the past have been applied so successfully to static equilibrium properties.
引用
收藏
页码:291 / 318
页数:30
相关论文
共 73 条
[51]   Dynamical aspects of isomerization and melting transitions in [H2O]8 [J].
Laria, D ;
Rodriguez, J ;
Dellago, C ;
Chandler, D .
JOURNAL OF PHYSICAL CHEMISTRY A, 2001, 105 (12) :2646-2651
[52]   THE KINETICS OF THE RECOMBINATION OF METHYL RADICALS AND IODINE ATOMS [J].
MARCUS, RA ;
RICE, OK .
JOURNAL OF PHYSICAL AND COLLOID CHEMISTRY, 1951, 55 (06) :894-908
[53]   The nature of the hydrated excess proton in water [J].
Marx, D ;
Tuckerman, ME ;
Hutter, J ;
Parrinello, M .
NATURE, 1999, 397 (6720) :601-604
[54]   Spiers Memorial Lecture - Quantum and semiclassical theory of chemical reaction rates [J].
Miller, WH .
FARADAY DISCUSSIONS, 1998, 110 :1-21
[55]  
Newman M. E. J., 1999, MONTE CARLO METHODS
[56]   Pathways for protein folding: is a new view needed? [J].
Pande, VS ;
Grosberg, AY ;
Tanaka, T ;
Rokhsar, DS .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 1998, 8 (01) :68-79
[57]   From silicon to RNA: The coming of age of ab initio molecular dynamics [J].
Parrinello, M .
SOLID STATE COMMUNICATIONS, 1997, 102 (2-3) :107-120
[59]   DYNAMIC ASPECTS OF THE NA+-CL- ION-PAIR ASSOCIATION IN WATER [J].
REY, R ;
GUARDIA, E .
JOURNAL OF PHYSICAL CHEMISTRY, 1992, 96 (11) :4712-4718
[60]   Theories of unimolecular gas reactions at low pressures II [J].
Rice, OK ;
Ramsperger, HC .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1928, 50 :617-620