The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid-binding fold

被引:362
作者
Bycroft, M [1 ]
Hubbard, TJP [1 ]
Proctor, M [1 ]
Freund, SMV [1 ]
Murzin, AG [1 ]
机构
[1] UNIV CAMBRIDGE, CTR MRC, CAMBRIDGE CB2 2QH, ENGLAND
基金
英国医学研究理事会;
关键词
D O I
10.1016/S0092-8674(00)81844-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The S1 domain, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the E. coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site. The structure of the S1 domain is very similar to that of cold shock protein, suggesting that they are both derived from an ancient nucleic acid-binding protein. Enhanced sequence searches reveal hitherto unidentified S1 domains in RNase E, RNase II, NusA, EMB-5, and other proteins.
引用
收藏
页码:235 / 242
页数:8
相关论文
共 66 条
[41]   STEREOSPECIFIC NUCLEAR MAGNETIC-RESONANCE ASSIGNMENTS OF THE METHYL-GROUPS OF VALINE AND LEUCINE IN THE DNA-BINDING DOMAIN OF THE 434-REPRESSOR BY BIOSYNTHETICALLY DIRECTED FRACTIONAL C-13 LABELING [J].
NERI, D ;
SZYPERSKI, T ;
OTTING, G ;
SENN, H ;
WUTHRICH, K .
BIOCHEMISTRY, 1989, 28 (19) :7510-7516
[42]   The decay of bacterial messenger RNA [J].
Nierlich, DP ;
Murakawa, GJ .
PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY, VOL 52, 1996, 52 :153-216
[43]   CYTOPLASMIC AXIAL FILAMENTS IN ESCHERICHIA-COLI-CELLS - POSSIBLE FUNCTION IN THE MECHANISM OF CHROMOSOME SEGREGATION AND CELL-DIVISION [J].
OKADA, Y ;
WACHI, M ;
HIRATA, A ;
SUZUKI, K ;
NAGAI, K ;
MATSUHASHI, M .
JOURNAL OF BACTERIOLOGY, 1994, 176 (03) :917-922
[44]   THE CRYSTAL-STRUCTURE OF THE LYSYL-TRANSFER-RNA SYNTHETASE (LYSU) FROM ESCHERICHIA-COLI [J].
ONESTI, S ;
MILLER, AD ;
BRICK, P .
STRUCTURE, 1995, 3 (02) :163-176
[45]   CRYSTAL-STRUCTURE AT 1.92 ANGSTROM RESOLUTION OF THE RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN COMPLEXED WITH AN RNA HAIRPIN [J].
OUBRIDGE, C ;
ITO, N ;
EVANS, PR ;
TEO, CH ;
NAGAI, K .
NATURE, 1994, 372 (6505) :432-438
[46]   A PROTEIN COMPLEX MEDIATING MESSENGER-RNA DEGRADATION IN ESCHERICHIA-COLI [J].
PY, B ;
CAUSTON, H ;
MUDD, EA ;
HIGGINS, CF .
MOLECULAR MICROBIOLOGY, 1994, 14 (04) :717-729
[47]   Crystal structure of DNA recombination protein RuvA and a model for its binding to the Holliday junction [J].
Rafferty, JB ;
Sedelnikova, SE ;
Hargreaves, D ;
Artymiuk, PJ ;
Baker, PJ ;
Sharples, GJ ;
Mahdi, AA ;
Lloyd, RG ;
Rice, DW .
SCIENCE, 1996, 274 (5286) :415-421
[48]  
REGNIER P, 1987, J BIOL CHEM, V262, P63
[49]   HIGH-AFFINITY RNA LIGANDS TO ESCHERICHIA-COLI RIBOSOMES AND RIBOSOMAL-PROTEIN S1 - COMPARISON OF NATURAL AND UNNATURAL BINDING-SITES [J].
RINGQUIST, S ;
JONES, T ;
SNYDER, EE ;
GIBSON, T ;
BONI, I ;
GOLD, L .
BIOCHEMISTRY, 1995, 34 (11) :3640-3648
[50]  
ROST B, 1994, COMPUT APPL BIOSCI, V10, P53