Tryptophan zippers:: Stable, monomeric β-hairpins

被引:645
作者
Cochran, AG [1 ]
Skelton, NJ [1 ]
Starovasnik, MA [1 ]
机构
[1] Genentech Inc, Dept Prot Engn, S San Francisco, CA 94080 USA
关键词
D O I
10.1073/pnas.091100898
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
A structural motif, the tryptophan zipper (trpzip), greatly stabilizes the beta -hairpin conformation in short peptides. Peptides (12 or it 16 aa in length) with four different turn sequences are monomeric and fold cooperatively in water, as has been observed previously for some hairpin peptides. However, the folding free energies of the trpzips exceed substantially those of all previously reported beta -hairpins and even those of some larger designed proteins. NMR structures of three of the trpzip peptides reveal exceptionally well-defined beta -hairpin conformations stabilized by cross-strand pairs of indole rings. The trpzips are the smallest peptides to adopt an unique tertiary fold without requiring metal binding, unusual amino acids, or disulfide crosslinks.
引用
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页码:5578 / 5583
页数:6
相关论文
共 39 条
[1]   THERMODYNAMIC ANALYSIS OF THE FOLDING OF THE STREPTOCOCCAL PROTEIN-G IGG-BINDING DOMAINS B1 AND B2 - WHY SMALL PROTEINS TEND TO HAVE HIGH DENATURATION TEMPERATURES [J].
ALEXANDER, P ;
FAHNESTOCK, S ;
LEE, T ;
ORBAN, J ;
BRYAN, P .
BIOCHEMISTRY, 1992, 31 (14) :3597-3603
[2]   PROTEIN STABILITY CURVES [J].
BECKTEL, WJ ;
SCHELLMAN, JA .
BIOPOLYMERS, 1987, 26 (11) :1859-1877
[3]   A SHORT LINEAR PEPTIDE THAT FOLDS INTO A NATIVE STABLE BETA-HAIRPIN IN AQUEOUS-SOLUTION [J].
BLANCO, FJ ;
RIVAS, G ;
SERRANO, L .
NATURE STRUCTURAL BIOLOGY, 1994, 1 (09) :584-590
[4]  
CAVANAGH J, 1995, PROTEIN NMR SPECTROS
[5]   COILING OF BETA-PLEATED SHEETS [J].
CHOTHIA, C .
JOURNAL OF MOLECULAR BIOLOGY, 1983, 163 (01) :107-117
[6]   A minimal peptide scaffold for β-turn display:: Optimizing a strand position in disulfide-cyclized β-hairpins [J].
Cochran, AG ;
Tong, RT ;
Starovasnik, MA ;
Park, EJ ;
McDowell, RS ;
Theaker, JE ;
Skelton, NJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (04) :625-632
[7]   De novo protein design: Towards fully automated sequence selection [J].
Dahiyat, BI ;
Sarisky, CA ;
Mayo, SL .
JOURNAL OF MOLECULAR BIOLOGY, 1997, 273 (04) :789-796
[8]   De novo protein design: Fully automated sequence selection [J].
Dahiyat, BI ;
Mayo, SL .
SCIENCE, 1997, 278 (5335) :82-87
[9]   De novo design and structural characterization of proteins and metalloproteins [J].
DeGrado, WF ;
Summa, CM ;
Pavone, V ;
Nastri, F ;
Lombardi, A .
ANNUAL REVIEW OF BIOCHEMISTRY, 1999, 68 :779-819
[10]  
Espinosa JF, 2000, ANGEW CHEM INT EDIT, V39, P2330, DOI 10.1002/1521-3773(20000703)39:13<2330::AID-ANIE2330>3.0.CO