A 9Å resolution x-ray crystallographic map of the large ribosomal subunit

The 50S subunit of the ribosome catalyzes the peptidyl-transferase reaction of protein synthesis. We have generated X-ray crystallographic electron density maps of the large ribosomal subunit from Haloarcula marismortui at various resolutions up to 9 Angstrom using data from crystals that diffract to 3 Angstrom. Positioning a 20 Angstrom resolution EM image of these particles in the crystal lattice produced phases accurate enough to locate the bound heavy atoms in three derivatives using difference Fourier maps, thus demonstrating the correctness of the EM model and its placement in the unit cell. At 20 Angstrom resolution, the X-ray map is similar to the EM map; however, at 9 Angstrom it reveals long, continuous, but branched features whose shape, diameter, and right-handed twist are consistent with segments of double-helical RNA that crisscross the subunit.