MODELLER: Generation and refinement of homology-based protein structure models

被引:1427
作者
Fiser, A [1 ]
Sali, A
机构
[1] Albert Einstein Coll Med, Dept Biochem, Bronx, NY 10461 USA
[2] Albert Einstein Coll Med, Seaver Fdn Ctr Bioinformat, Bronx, NY 10461 USA
[3] Univ Calif San Francisco, San Francisco, CA 94143 USA
来源
MACROMOLECULAR CRYSTALLOGRAPHY, PT D | 2003年 / 374卷
关键词
D O I
10.1016/S0076-6879(03)74020-8
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
[No abstract available]
引用
收藏
页码:461 / 491
页数:31
相关论文
共 82 条
[41]   Comparative protein structure modeling by iterative alignment, model building and model assessment [J].
John, B ;
Sali, A .
NUCLEIC ACIDS RESEARCH, 2003, 31 (14) :3982-3992
[42]   KNOWLEDGE-BASED PROTEIN MODELING [J].
JOHNSON, MS ;
SRINIVASAN, N ;
SOWDHAMINI, R ;
BLUNDELL, TL .
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY, 1994, 29 (01) :1-68
[43]   A NEW APPROACH TO PROTEIN FOLD RECOGNITION [J].
JONES, DT ;
TAYLOR, WR ;
THORNTON, JM .
NATURE, 1992, 358 (6381) :86-89
[44]   USING KNOWN SUBSTRUCTURES IN PROTEIN MODEL-BUILDING AND CRYSTALLOGRAPHY [J].
JONES, TA ;
THIRUP, S .
EMBO JOURNAL, 1986, 5 (04) :819-822
[45]   Hidden Markov models for detecting remote protein homologies [J].
Karplus, K ;
Barrett, C ;
Hughey, R .
BIOINFORMATICS, 1998, 14 (10) :846-856
[46]   Generalized comparative modeling (GENECOMP): A combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement [J].
Kolinski, A ;
Betancourt, MR ;
Kihara, D ;
Rotkiewicz, P ;
Skolnick, J .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2001, 44 (02) :133-149
[47]   HIDDEN MARKOV-MODELS IN COMPUTATIONAL BIOLOGY - APPLICATIONS TO PROTEIN MODELING [J].
KROGH, A ;
BROWN, M ;
MIAN, IS ;
SJOLANDER, K ;
HAUSSLER, D .
JOURNAL OF MOLECULAR BIOLOGY, 1994, 235 (05) :1501-1531
[48]   PROCHECK - A PROGRAM TO CHECK THE STEREOCHEMICAL QUALITY OF PROTEIN STRUCTURES [J].
LASKOWSKI, RA ;
MACARTHUR, MW ;
MOSS, DS ;
THORNTON, JM .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1993, 26 :283-291
[49]   HOW DIFFERENT AMINO-ACID-SEQUENCES DETERMINE SIMILAR PROTEIN STRUCTURES - STRUCTURE AND EVOLUTIONARY DYNAMICS OF THE GLOBINS [J].
LESK, AM ;
CHOTHIA, C .
JOURNAL OF MOLECULAR BIOLOGY, 1980, 136 (03) :225-&
[50]   A unified statistical framework for sequence comparison and structure comparison [J].
Levitt, M ;
Gerstein, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (11) :5913-5920