The Comprehensive Microbial Resource

被引：333

作者：

Peterson, JD ^{[1
]}

Umayam, LA ^{[1
]}

Dickinson, T ^{[1
]}

Hickey, EK ^{[1
]}

White, O ^{[1
]}

机构：

[1] Inst Genom Res, Rockville, MD 20850 USA

来源：

NUCLEIC ACIDS RESEARCH | 2001年 / 29卷 / 01期

关键词：

D O I：

10.1093/nar/29.1.123

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 [生物化学与分子生物学]; 081704 [应用化学];

摘要：

One challenge presented by large-scale genome sequencing efforts is effective display of uniform information to the scientific community. The Comprehensive Microbial Resource (CMR) contains robust annotation of all complete microbial genomes and allows for a wide variety of data retrievals. The bacterial information has been placed on the Web at http://www.tigr.org/CMR for retrieval using standard web browsing technology. Retrievals can be based on protein properties such as molecular weight or hydrophobicity, GC-content, functional role assignments and taxonomy. The CMR also has special web-based tools to allow data mining using pre-run homology searches, whole genome dot-plots, batch downloading and traversal across genomes using st variety of datatypes.

引用

页码：123 / 125

页数：3

共 10 条

[1]

Alignment of whole genomes [J].

Delcher, AL ;

Kasif, S ;

Fleischmann, RD ;

Peterson, J ;

White, O ;

Salzberg, SL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (11) :2369-2376

[2]

Improved microbial gene identification with GLIMMER [J].

Delcher, AL ;

Harmon, D ;

Kasif, S ;

White, O ;

Salzberg, SL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (23) :4636-4641

[3]

Profile hidden Markov models [J].

Eddy, SR .

BIOINFORMATICS, 1998, 14 (09) :755-763

[4]

Prediction of transcription terminators in bacterial genomes [J].

Ermolaeva, MD ;

Khalak, HG ;

White, O ;

Smith, HO ;

Salzberg, SL .

JOURNAL OF MOLECULAR BIOLOGY, 2000, 301 (01) :27-33

[5]

TIGRFAMs: a protein family resource for the functional identification of proteins [J].

Haft, DH ;

Loftus, BJ ;

Richardson, DL ;

Yang, F ;

Eisen, JA ;

Paulsen, IT ;

White, O .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :41-43

[6]

The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus [J].

Klenk, HP ;

Clayton, RA ;

Tomb, JF ;

White, O ;

Nelson, KE ;

Ketchum, KA ;

Dodson, RJ ;

Gwinn, M ;

Hickey, EK ;

Peterson, JD ;

Richardson, DL ;

Kerlavage, AR ;

Graham, DE ;

Kyrpides, NC ;

Fleischmann, RD ;

Quackenbush, J ;

Lee, NH ;

Sutton, GG ;

Gill, S ;

Kirkness, EF ;

Dougherty, BA ;

McKenney, K ;

Adams, MD ;

Loftus, B ;

Peterson, S ;

Reich, CI ;

McNeil, LK ;

Badger, JH ;

Glodek, A ;

Zhou, LX ;

Overbeek, R ;

Gocayne, JD ;

Weidman, JF ;

McDonald, L ;

Utterback, T ;

Cotton, MD ;

Spriggs, T ;

Artiach, P ;

Kaine, BP ;

Sykes, SM ;

Sadow, PW ;

DAndrea, KP ;

Bowman, C ;

Fujii, C ;

Garland, SA ;

Mason, TM ;

Olsen, GJ ;

Fraser, CM ;

Smith, HO ;

Woese, CR .

NATURE, 1997, 390 (6658) :364-&

[7]

Skewed oligomers and origins of replication [J].

Salzberg, SL ;

Salzberg, AJ ;

Kerlavage, AR ;

Tomb, JF .

GENE, 1998, 217 (1-2) :57-67

[8]

The COG database: new developments in phylogenetic classification of proteins from complete genomes [J].

Tatusov, RL ;

Natale, DA ;

Garkavtsev, IV ;

Tatusova, TA ;

Shankavaram, UT ;

Rao, BS ;

Kiryutin, B ;

Galperin, MY ;

Fedorova, ND ;

Koonin, EV .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :22-28

[9]

The COG database: a tool for genome-scale analysis of protein functions and evolution [J].

Tatusov, RL ;

Galperin, MY ;

Natale, DA ;

Koonin, EV .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :33-36

[10]

Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1 [J].

White, O ;

Eisen, JA ;

Heidelberg, JF ;

Hickey, EK ;

Peterson, JD ;

Dodson, RJ ;

Haft, DH ;

Gwinn, ML ;

Nelson, WC ;

Richardson, DL ;

Moffat, KS ;

Qin, HY ;

Jiang, LX ;

Pamphile, W ;

Crosby, M ;

Shen, M ;

Vamathevan, JJ ;

Lam, P ;

McDonald, L ;

Utterback, T ;

Zalewski, C ;

Makarova, KS ;

Aravind, L ;

Daly, MJ ;

Minton, KW ;

Fleischmann, RD ;

Ketchum, KA ;

Nelson, KE ;

Salzberg, S ;

Smith, HO ;

Venter, JC ;

Fraser, CM .

SCIENCE, 1999, 286 (5444) :1571-1577

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