Lipid bilayer structure determined by the simultaneous analysis of neutron and x-ray scattering data

被引:480
作者
Kucerka, Norbert [1 ,2 ]
Nagle, John F. [3 ]
Sachs, Jonathan N. [4 ]
Feller, Scott E. [5 ]
Pencer, Jeremy [6 ]
Jackson, Andrew [7 ]
Katsaras, John [1 ,8 ,9 ,10 ]
机构
[1] CNR, Canadian Neutron Beam Ctr, Chalk River, ON K0J 1J0, Canada
[2] Comenius Univ, Fac Pharm, Dept Phys Chem Drugs, Bratislava 83232, Slovakia
[3] Carnegie Mellon Univ, Dept Phys, Pittsburgh, PA 15213 USA
[4] Univ Minnesota, Minneapolis, MN 55455 USA
[5] Wabash Coll, Dept Chem, Crawfordsville, IN 47933 USA
[6] Atom Energy Canada Ltd, Chalk River Labs, Chalk River, ON K0J 1J0, Canada
[7] Natl Inst Stand & Technol, Ctr Neutron Res, Gaithersburg, MD 20899 USA
[8] Brock Univ, Dept Phys, St Catharines, ON L2S 3A1, Canada
[9] Univ Guelph, Guelph Waterloo Phys Inst, Guelph, ON N1G 2W1, Canada
[10] Univ Guelph, Biophys Interdept Grp, Guelph, ON N1G 2W1, Canada
关键词
D O I
10.1529/biophysj.108.132662
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Quantitative structures were obtained for the fully hydrated fluid phases of dioleoylphosphatidylcholine ( DOPC) and dipalmitoylphosphatidylcholine ( DPPC) bilayers by simultaneously analyzing x-ray and neutron scattering data. The neutron data for DOPC included two solvent contrasts, 50% and 100% D2O. For DPPC, additional contrast data were obtained with deuterated analogs DPPC_d62, DPPC_d13, and DPPC_d9. For the analysis, we developed a model that is based on volume probability distributions and their spatial conservation. The model's design was guided and tested by a DOPC molecular dynamics simulation. The model consistently captures the salient features found in both electron and neutron scattering density profiles. A key result of the analysis is the molecular surface area, A. For DPPC at 50 degrees C A 63.0 angstrom(2), whereas for DOPC at 30 degrees C A 67.4 angstrom(2), with estimated uncertainties of 1 angstrom(2). Although A for DPPC agrees with a recently reported value obtained solely from the analysis of x-ray scattering data, A for DOPC is almost 10% smaller. This improved method for determining lipid areas helps to reconcile long-standing differences in the values of lipid areas obtained from stand-alone x-ray and neutron scattering experiments and poses new challenges for molecular dynamics simulations.
引用
收藏
页码:2356 / 2367
页数:12
相关论文
共 38 条
[11]   Simulation-based methods for interpreting X-ray data from lipid bilayers [J].
Klauda, JB ;
Kucerka, N ;
Brooks, BR ;
Pastor, RW ;
Nagle, JF .
BIOPHYSICAL JOURNAL, 2006, 90 (08) :2796-2807
[12]   An ab initio study on the torsional surface of alkanes and its effect on molecular simulations of alkanes and a DPPC bilayer [J].
Klauda, JB ;
Brooks, BR ;
MacKerell, AD ;
Venable, RM ;
Pastor, RW .
JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (11) :5300-5311
[13]   Reduction and analysis of SANS and USANS data using IGOR Pro [J].
Kline, Steven R. .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2006, 39 :895-900
[14]   Specific volumes of unsaturated phosphatidylcholines in the liquid crystalline lamellar phase [J].
Koenig, BW ;
Gawrisch, K .
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES, 2005, 1715 (01) :65-70
[15]   Influence of cholesterol on the bilayer properties of monounsaturated phosphatidylcholine unilamellar vesicles [J].
Kucerka, N. ;
Pencer, J. ;
Nieh, M.-P. ;
Katsaras, J. .
EUROPEAN PHYSICAL JOURNAL E, 2007, 23 (03) :247-254
[16]   Structure of fully hydrated fluid phase lipid bilayers with monounsaturated chains [J].
Kucerka, N ;
Tristram-Nagle, S ;
Nagle, JF .
JOURNAL OF MEMBRANE BIOLOGY, 2005, 208 (03) :193-202
[17]   Models to analyze small-angle neutron scattering from unilamellar lipid vesicles [J].
Kucerka, N ;
Nagle, JF ;
Feller, SE ;
Balgavy, P .
PHYSICAL REVIEW E, 2004, 69 (05) :9
[18]   Structure of fully hydrated fluid phase DMPC and DLPC lipid bilayers using X-ray scattering from oriented multilamellar arrays and from unilamellar vesicles [J].
Kucerka, N ;
Liu, YF ;
Chu, NJ ;
Petrache, HI ;
Tristram-Nagle, ST ;
Nagle, JF .
BIOPHYSICAL JOURNAL, 2005, 88 (04) :2626-2637
[19]   The study of liposomes, lamellae and membranes using neutrons and X-rays [J].
Kucerka, Norbert ;
Nieh, Mu-Ping ;
Pencer, Jeremy ;
Harroun, Thad ;
Katsaras, John .
CURRENT OPINION IN COLLOID & INTERFACE SCIENCE, 2007, 12 (01) :17-22
[20]   Curvature effect on the structure of phospholipid bilayers [J].
Kucerka, Norbert ;
Pencer, Jeremy ;
Sachs, Jonathan N. ;
Nagle, John F. ;
Katsaras, John .
LANGMUIR, 2007, 23 (03) :1292-1299