ESPript:: analysis of multiple sequence alignments in PostScript

被引：2630

作者：

Gouet, P

Courcelle, E

Stuart, DI

Métoz, F

机构：

[1] Inst Pharmacol & Biol Struct, Grp Cristallog Biol, F-31077 Toulouse, France

[2] Lab Mol Biophys, Oxford OX1 3QU, England

[3] Oxford Ctr Mol Sci, Oxford OX1 3QT, England

[4] Inst Biol Struct, F-38027 Grenoble, France

来源：

BIOINFORMATICS | 1999年 / 15卷 / 04期

关键词：

D O I：

10.1093/bioinformatics/15.4.305

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Motivation: The program ESPript (Easy Sequencing in PostScript) allows the rapid visualization, via PostScript output, of sequences aligned with popular programs such as CLUSTAL-W or GCG PILEUP. It can read secondary structure files (such as that created by the program DSSP) to produce a synthesis of both sequence and structural information. Results: ESPript can be run via a command file or a friendly html-based user interface. The program calculates an homology score by columns of residues and can sort this calculation by groups of sequences. It offers a palette of markers to highlight important regions in the alignment. ESPript can also paste information on residue conservation into coordinate files, for subsequent visualization with a graphics program.

引用

页码：305 / 308

页数：4

共 17 条

[1]

ATTWOOD T, 1997, EMBNET NEWS, V3

[2] The SWISS-PROT protein sequence data bank and its supplement TrEMBL [J].

Bairoch, A ;

Apweller, R .

NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :31-36

[3] ALSCRIPT - A TOOL TO FORMAT MULTIPLE SEQUENCE ALIGNMENTS [J].

BARTON, GJ .

PROTEIN ENGINEERING, 1993, 6 (01) :37-40

[4] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].

BERNSTEIN, FC ;

KOETZLE, TF ;

WILLIAMS, GJB ;

MEYER, EF ;

BRICE, MD ;

RODGERS, JR ;

KENNARD, O ;

SHIMANOUCHI, T ;

TASUMI, M .

JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542

[5] CRYSTALLOGRAPHIC R-FACTOR REFINEMENT BY MOLECULAR-DYNAMICS [J].

BRUNGER, AT ;

KURIYAN, J ;

KARPLUS, M .

SCIENCE, 1987, 235 (4787) :458-460

[6]

Dayhoff M.O., 1978, Atlas of Protein Sequence and Structure, P345

[7] Knowledge-based protein secondary structure assignment [J].

Frishman, D ;

Argos, P .

PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1995, 23 (04) :566-579

[8] THE CRYSTAL-STRUCTURE OF BLUETONGUE VIRUS VP7 [J].

GRIMES, J ;

BASAK, AK ;

ROY, P ;

STUART, D .

NATURE, 1995, 373 (6510) :167-170

[9] The atomic structure of the bluetongue virus core [J].

Grimes, JM ;

Burroughs, JN ;

Gouet, P ;

Diprose, JM ;

Malby, R ;

Ziéntara, S ;

Mertens, PPC ;

Stuart, DI .

NATURE, 1998, 395 (6701) :470-478

[10]

Henikoff JG, 1996, METHOD ENZYMOL, V266, P88

← 1 2 →