MULTIPLE-SITE TITRATION CURVES OF PROTEINS - AN ANALYSIS OF EXACT AND APPROXIMATE METHODS FOR THEIR CALCULATION

被引:261
作者
BASHFORD, D [1 ]
KARPLUS, M [1 ]
机构
[1] HARVARD UNIV,DEPT CHEM,CAMBRIDGE,MA 02138
关键词
D O I
10.1021/j100176a093
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The exact calculation of a multisite titration curve, given the intrinsic pK(a)s of the sites and the site-site interaction constants, grows exponentially in the number of sites and becomes prohibitive for molecules having more than 15 or 20 sites. A commonly used approximation method, introduced by Tanford and Roxby (Biochemistry 1972, 11, 2192) gives large computational savings and is routinely employed for proteins. This method is shown to be a mean field approximation to the multiple-site problem. It gives significant errors when strongly interacting sites titrate at similar pH values. An alternative method, the reduced-site approximation, is introduced. Both approximations are tested against the exact method on a set of randomly generated hypothetical molecules. The reduced-site approximation is found to have much greater accuracy throughout most of the titration curve. It is recommended that the reduced site approximation be used when computationally feasible.
引用
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页码:9556 / 9561
页数:6
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