DIRECT FLUORESCENCE ANALYSIS OF GENETIC POLYMORPHISMS BY HYBRIDIZATION WITH OLIGONUCLEOTIDE ARRAYS ON GLASS SUPPORTS

被引:451
作者
GUO, Z [1 ]
GUILFOYLE, RA [1 ]
THIEL, AJ [1 ]
WANG, RF [1 ]
SMITH, LM [1 ]
机构
[1] UNIV WISCONSIN,DEPT CHEM,MADISON,WI 53706
关键词
D O I
10.1093/nar/22.24.5456
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A simple and rapid method for the analysis of genetic polymorphisms has been developed using allele-specific oligonucleotide arrays bound to glass supports. Allele-specific oligonucleotides are covalently immobilized on glass slides in arrays of 3 mm spots. Genomic DNA is amplified by PCR using one fluorescently tagged primer oligonucleotide and one biotinylated primer oligonucleotide. The two complementary DNA strands are separated, the fluorescently tagged strand is hybridized to the support-bound oligonucleotide array, and the hybridization pattern is detected by fluorescence scanning. Multiple polymorphisms present in the PCR product may be detected in parallel. The effect of spacer length, surface density and hybridization conditions were evaluated, as was the relative efficacy of hybridization with single or double-stranded PCR products. The utility of the method was demonstrated in the parallel analysis of 5 point mutations from exon 4 of the human tyrosinase gene.
引用
收藏
页码:5456 / 5465
页数:10
相关论文
共 47 条
[1]   A NOVEL METHOD FOR NUCLEIC-ACID SEQUENCE DETERMINATION [J].
BAINS, W ;
SMITH, GC .
JOURNAL OF THEORETICAL BIOLOGY, 1988, 135 (03) :303-307
[2]   INDUCTION OF PIGMENTATION IN MOUSE FIBROBLASTS BY EXPRESSION OF HUMAN TYROSINASE CDNA [J].
BOUCHARD, B ;
FULLER, BB ;
VIJAYASARADHI, S ;
HOUGHTON, AN .
JOURNAL OF EXPERIMENTAL MEDICINE, 1989, 169 (06) :2029-2042
[3]   PREDICTING DNA DUPLEX STABILITY FROM THE BASE SEQUENCE [J].
BRESLAUER, KJ ;
FRANK, R ;
BLOCKER, H ;
MARKY, LA .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (11) :3746-3750
[4]   ENHANCED DNA-SEQUENCING BY HYBRIDIZATION [J].
BROUDE, NE ;
SANO, T ;
SMITH, CL ;
CANTOR, CR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (08) :3072-3076
[5]   DETECTION OF NUCLEIC-ACID HYBRIDIZATION BY NONRADIATIVE FLUORESCENCE RESONANCE ENERGY-TRANSFER [J].
CARDULLO, RA ;
AGRAWAL, S ;
FLORES, C ;
ZAMECNIK, PC ;
WOLF, DE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (23) :8790-8794
[6]  
CASKEY CT, 1986, SCIENCE, V236, P1223
[7]   MUTATION DETECTION [J].
COTTON, RGH ;
MALCOLM, ADB .
NATURE, 1991, 353 (6344) :582-583
[8]  
CROS P, 1992, LANCET, V340, P879
[9]   DNA-SEQUENCE DETERMINATION BY HYBRIDIZATION - A STRATEGY FOR EFFICIENT LARGE-SCALE SEQUENCING [J].
DRMANAC, R ;
DRMANAC, S ;
STREZOSKA, Z ;
PAUNESKU, T ;
LABAT, I ;
ZEREMSKI, M ;
SNODDY, J ;
FUNKHOUSER, WK ;
KOOP, B ;
HOOD, L ;
CRKVENJAKOV, R .
SCIENCE, 1993, 260 (5114) :1649-1653
[10]  
DRMANAC R, 1989, GENOMICS, V4, P114