Plant snoRNA database

被引：74

作者：

Brown, JWS ^{[1
]}

Echeverria, M

Qu, LH

Lowe, TM

Bachellerie, JP

Hüttenhofer, A

Kastenmayer, JP

Green, PJ

Shaw, P

Marshall, DF

机构：

[1] Scottish Crop Res Inst, Gene Express Programme, Dundee DD2 5DA, Scotland

[2] Scottish Crop Res Inst, Computat Biol Programme, Dundee DD2 5DA, Scotland

[3] Univ Perpignan, CNRS, UMR 5096, Lab Genome & Dev Plantes, F-66860 Perpignan, France

[4] Zhongshan Univ, Biotechnol Res Ctr, Minist Educ, Key Lab Gene Engn, Guangzhou 510275, Peoples R China

[5] Univ Calif Santa Cruz, Dept Comp Engn, Santa Cruz, CA 95064 USA

[6] Univ Toulouse 3, CNRS, Lab Biol Mol Eucaryote, F-31062 Toulouse, France

[7] Univ Munster, Inst Expt Pathol, D-48149 Munster, Germany

[8] Michigan State Univ, Dept Energy, Plant Res Lab, E Lansing, MI 48824 USA

[9] Univ Delaware, Delaware Biotechnol Inst, Newark, DE 19716 USA

来源：

NUCLEIC ACIDS RESEARCH | 2003年 / 31卷 / 01期

关键词：

D O I：

10.1093/nar/gkg009

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 [生物化学与分子生物学]; 081704 [应用化学];

摘要：

The Plant snoRNA database ( http: / / www. scri. sari. ac. uk/ plant_ snoRNA/) provides information on small nucleolar RNAs from Arabidopsis and eighteen other plant species. Information includes sequences, expression data, methylation and pseudouridylation target modification sites, initial gene organization ( polycistronic, single gene and intronic) and the number of gene variants. The Arabidopsis information is divided into box C/ D and box H/ ACA snoRNAs, and within each of these groups, by target sites in rRNA, snRNA or unknown. Alignments of orthologous genes and gene variants from different plant species are available for many snoRNA genes. Plant snoRNA genes have been given a standard nomenclature, designed wherever possible, to provide a consistent identity with yeast and human orthologues.

引用

页码：432 / 435

页数：4

共 27 条

[1]

Bachellerie JP, 2000, RIBOSOME: STRUCTURE, FUNCTION, ANTIBIOTICS, AND CELLULAR INTERACTIONS, P191

[2]

Identification of 66 box C/D snoRNAs in Arabidopsis thaliana:: Extensive gene duplications generated multiple isoforms predicting new ribosomal RNA 2′-O-methylation sites [J].

Barneche, F ;

Gaspin, C ;

Guyot, R ;

Echeverría, M .

JOURNAL OF MOLECULAR BIOLOGY, 2001, 311 (01) :57-73

[3]

Brown JWS, 2001, RNA, V7, P1817

[4]

Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization [J].

Cavaillé, J ;

Buiting, K ;

Kiefmann, M ;

Lalande, M ;

Brannan, CI ;

Horsthemke, B ;

Bachellerie, JP ;

Brosius, J ;

Hüttenhofer, A .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (26) :14311-14316

[5]

STUDIES ON THE METHYLATION OF CYTOPLASMIC RIBOSOMAL-RNA FROM CULTURED HIGHER-PLANT CELLS [J].

CECCHINI, JP ;

MIASSOD, R .

EUROPEAN JOURNAL OF BIOCHEMISTRY, 1979, 98 (01) :203-214

[6]

Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp [J].

d'Orval, BC ;

Bortolin, ML ;

Gaspin, C ;

Bachellerie, JP .

NUCLEIC ACIDS RESEARCH, 2001, 29 (22) :4518-4529

[7]

Cajal body-specific small nuclear RNAs:: a novel class of 2′-O-methylation and pseudouridylation guide RNAs [J].

Darzacq, X ;

Jády, BE ;

Verheggen, C ;

Kiss, AM ;

Bertrand, E ;

Kiss, T .

EMBO JOURNAL, 2002, 21 (11) :2746-2756

[8]

Non-coding RNA genes and the modern RNA world [J].

Eddy, SR .

NATURE REVIEWS GENETICS, 2001, 2 (12) :919-929

[9]

The non-coding RNAs as riboregulators [J].

Erdmann, VA ;

Barciszewska, MZ ;

Szymanski, M ;

Hochberg, A ;

de Groot, N ;

Barciszewski, J .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :189-193

[10]

Biogenesis of small nucleolar ribonucleoproteins [J].

Filipowicz, W ;

Pogacic, V .

CURRENT OPINION IN CELL BIOLOGY, 2002, 14 (03) :319-327

← 1 2 3 →