Network motifs: theory and experimental approaches

被引:2233
作者
Alon, Uri [1 ]
机构
[1] Weizmann Inst Sci, Dept Mol Cell Biol, IL-76100 Rehovot, Israel
基金
美国国家卫生研究院; 以色列科学基金会;
关键词
D O I
10.1038/nrg2102
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Transcription regulation networks control the expression of genes. The transcription networks of well-studied microorganisms appear to be made up of a small set of recurring regulation patterns, called network motifs. The same network motifs have recently been found in diverse organisms from bacteria to humans, suggesting that they serve as basic building blocks of transcription networks. Here I review network motifs and their functions, with an emphasis on experimental studies. Network motifs in other biological networks are also mentioned, including signalling and neuronal networks.
引用
收藏
页码:450 / 461
页数:12
相关论文
共 101 条
[1]   Biological networks: The tinkerer as an engineer [J].
Alon, U .
SCIENCE, 2003, 301 (5641) :1866-1867
[2]  
Alon U., 2006, INTRO SYSTEMS BIOL D
[3]   A module of negative feedback regulators defines growth factor signaling [J].
Amit, Ido ;
Citri, Ami ;
Shay, Tal ;
Lu, Yiling ;
Katz, Menachem ;
Zhang, Fan ;
Tarcic, Gabi ;
Siwak, Doris ;
Lahad, John ;
Jacob-Hirsch, Jasmine ;
Amariglio, Ninette ;
Vaisman, Nora ;
Segal, Eran ;
Rechavi, Gideon ;
Alon, Uri ;
Mills, Gordon B. ;
Domany, Eytan ;
Yarden, Yosef .
NATURE GENETICS, 2007, 39 (04) :503-512
[4]   Evolutionary dynamics of prokaryotic transcriptional regulatory networks [J].
Babu, MM ;
Teichmann, SA ;
Aravind, L .
JOURNAL OF MOLECULAR BIOLOGY, 2006, 358 (02) :614-633
[5]   Structure and evolution of transcriptional regulatory networks [J].
Babu, MM ;
Luscombe, NM ;
Aravind, L ;
Gerstein, M ;
Teichmann, SA .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2004, 14 (03) :283-291
[6]   Biological rhythms - Circadian clocks limited by noise [J].
Barkai, N ;
Leibler, S .
NATURE, 2000, 403 (6767) :267-268
[7]   Spatiotemporal control of gene expression with pulse-generating networks [J].
Basu, S ;
Mehreja, R ;
Thiberge, S ;
Chen, MT ;
Weiss, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (17) :6355-6360
[8]   Engineering stability in gene networks by autoregulation [J].
Becskei, A ;
Serrano, L .
NATURE, 2000, 405 (6786) :590-593
[9]   Positive feedback in eukaryotic gene networks:: cell differentiation by graded to binary response conversion [J].
Becskei, A ;
Séraphin, B ;
Serrano, L .
EMBO JOURNAL, 2001, 20 (10) :2528-2535
[10]   Predicting gene expression from sequence [J].
Beer, MA ;
Tavazoie, S .
CELL, 2004, 117 (02) :185-198