TransTerm: A database of translational signals

被引：17

作者：

Dalphin, ME

Brown, CM

Stockwell, PA

Tate, WP

机构：

[1] UNIV OTAGO,CTR GENE RES,DUNEDIN,NEW ZEALAND

[2] IOWA STATE UNIV,DEPT PLANT PATHOL,AMES,IA 50011

来源：

NUCLEIC ACIDS RESEARCH | 1996年 / 24卷 / 01期

关键词：

D O I：

10.1093/nar/24.1.216

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The TransTerm database of sequence contexts of stop and start codons has been expanded to include similar to 50% more species than last year's release. It now contains 148 organisms and >39 500 coding sequences; it is now available on the World Wide Web. The database includes: (i) initiation and termination sequence contexts organized by species; (ii) summary parameters about the individual sequences (sequence length, GC%, GC3, Nc, CAI) in addition to tables of base frequencies for each species' stop and start codon sequence context; (iii) species codon usage tables; and (iv) summary tables of stop signal frequency.

引用

页码：216 / 218

页数：3

共 23 条

[1] CODON PREFERENCE IN THE TERMINAL REGION OF ESCHERICHIA-COLI GENES AND EVOLUTION OF STOP CODON USAGE [J].

ALFFSTEINBERGER, C ;

EPSTEIN, R .

JOURNAL OF THEORETICAL BIOLOGY, 1994, 168 (04) :461-463

[2] QUANTITATIVE-ANALYSIS OF RIBOSOME BINDING-SITES IN ESCHERICHIA-COLI [J].

BARRICK, D ;

VILLANUEBA, K ;

CHILDS, J ;

KALIL, R ;

SCHNEIDER, TD ;

LAWRENCE, CE ;

GOLD, L ;

STORMO, GD .

NUCLEIC ACIDS RESEARCH, 1994, 22 (07) :1287-1295

[3] GENBANK [J].

BENSON, D ;

LIPMAN, DJ ;

OSTELL, J .

NUCLEIC ACIDS RESEARCH, 1993, 21 (13) :2963-2965

[4] THE EFFICIENCY OF TRANSLATION TERMINATION IS DETERMINED BY A SYNERGISTIC INTERPLAY BETWEEN UPSTREAM AND DOWNSTREAM SEQUENCES IN SACCHAROMYCES-CEREVISIAE [J].

BONETTI, B ;

FU, LW ;

MOON, J ;

BEDWELL, DM .

JOURNAL OF MOLECULAR BIOLOGY, 1995, 251 (03) :334-345

[5] THE TRANSLATIONAL TERMINATION SIGNAL DATABASE [J].

BROWN, CM ;

DALPHIN, ME ;

STOCKWELL, PA ;

TATE, WP .

NUCLEIC ACIDS RESEARCH, 1993, 21 (13) :3119-3123

[6] CODON CONTEXT [J].

BUCKINGHAM, RH .

EXPERIENTIA, 1990, 46 (11-12) :1126-1133

[7] A COMPREHENSIVE SET OF SEQUENCE-ANALYSIS PROGRAMS FOR THE VAX [J].

DEVEREUX, J ;

HAEBERLI, P ;

SMITHIES, O .

NUCLEIC ACIDS RESEARCH, 1984, 12 (01) :387-395

[8] WHOLE-GENOME RANDOM SEQUENCING AND ASSEMBLY OF HAEMOPHILUS-INFLUENZAE RD [J].

FLEISCHMANN, RD ;

ADAMS, MD ;

WHITE, O ;

CLAYTON, RA ;

KIRKNESS, EF ;

KERLAVAGE, AR ;

BULT, CJ ;

TOMB, JF ;

DOUGHERTY, BA ;

MERRICK, JM ;

MCKENNEY, K ;

SUTTON, G ;

FITZHUGH, W ;

FIELDS, C ;

GOCAYNE, JD ;

SCOTT, J ;

SHIRLEY, R ;

LIU, LI ;

GLODEK, A ;

KELLEY, JM ;

WEIDMAN, JF ;

PHILLIPS, CA ;

SPRIGGS, T ;

HEDBLOM, E ;

COTTON, MD ;

UTTERBACK, TR ;

HANNA, MC ;

NGUYEN, DT ;

SAUDEK, DM ;

BRANDON, RC ;

FINE, LD ;

FRITCHMAN, JL ;

FUHRMANN, JL ;

GEOGHAGEN, NSM ;

GNEHM, CL ;

MCDONALD, LA ;

SMALL, KV ;

FRASER, CM ;

SMITH, HO ;

VENTER, JC .

SCIENCE, 1995, 269 (5223) :496-512

[9] AN ANALYSIS OF 5'-NONCODING SEQUENCES FROM 699 VERTEBRATE MESSENGER-RNAS [J].

KOZAK, M .

NUCLEIC ACIDS RESEARCH, 1987, 15 (20) :8125-8148

[10]

KOZAK M, 1992, ANNU REV CELL BIOL, V8, P197, DOI 10.1146/annurev.cb.08.110192.001213

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