DNA Data Bank of Japan (DDBJ) in XML

被引：57

作者：

Miyazaki, S

Sugawara, H

Gojobori, T

Tateno, Y ^{[1
]}

机构：

[1] Natl Inst Genet, Ctr Informat Biol, Mishima, Shizuoka 4118540, Japan

[2] Natl Inst Genet, DNA Data Bank Japan, Mishima, Shizuoka 4118540, Japan

来源：

NUCLEIC ACIDS RESEARCH | 2003年 / 31卷 / 01期

关键词：

D O I：

10.1093/nar/gkg088

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) has collected and released more entries and bases than last year. This is mainly due to large-scale submissions from Japanese sequencing teams on mouse, rice, chimpanzee, nematoda and other organisms. The contributions of DDBJ over the past year are 17.3% (entries) and 10.3% (bases) of the combined outputs of the International Nucleotide Sequence Databases (INSD). Our complete genome sequence database, Genome Information Broker (GIB), has been improved by incorporating XML. It is now possible to perform a more sophisticated database search against the new GIB than the ordinary BLAST or FASTA search.

引用

页码：13 / 16

页数：4

共 11 条

[1]

ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999

[2] Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more [J].

Fumoto, M ;

Miyazaki, S ;

Sugawara, H .

NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :66-68

[3] Functional annotation of a full-length mouse cDNA collection [J].

Kawai, J ;

Shinagawa, A ;

Shibata, K ;

Yoshino, M ;

Itoh, M ;

Ishii, Y ;

Arakawa, T ;

Hara, A ;

Fukunishi, Y ;

Konno, H ;

Adachi, J ;

Fukuda, S ;

Aizawa, K ;

Izawa, M ;

Nishi, K ;

Kiyosawa, H ;

Kondo, S ;

Yamanaka, I ;

Saito, T ;

Okazaki, Y ;

Gojobori, T ;

Bono, H ;

Kasukawa, T ;

Saito, R ;

Kadota, K ;

Matsuda, H ;

Ashburner, M ;

Batalov, S ;

Casavant, T ;

Fleischmann, W ;

Gaasterland, T ;

Gissi, C ;

King, B ;

Kochiwa, H ;

Kuehl, P ;

Lewis, S ;

Matsuo, Y ;

Nikaido, I ;

Pesole, G ;

Quackenbush, J ;

Schriml, LM ;

Staubli, F ;

Suzuki, R ;

Tomita, M ;

Wagner, L ;

Washio, T ;

Sakai, K ;

Okido, T ;

Furuno, M ;

Aono, H .

NATURE, 2001, 409 (6821) :685-690

[4] RAPID AND SENSITIVE PROTEIN SIMILARITY SEARCHES [J].

LIPMAN, DJ ;

PEARSON, WR .

SCIENCE, 1985, 227 (4693) :1435-1441

[5] NEW METHOD FOR SEQUENCING DNA [J].

MAXAM, AM ;

GILBERT, W .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1977, 74 (02) :560-564

[6] A GENERAL METHOD APPLICABLE TO SEARCH FOR SIMILARITIES IN AMINO ACID SEQUENCE OF 2 PROTEINS [J].

NEEDLEMAN, SB ;

WUNSCH, CD .

JOURNAL OF MOLECULAR BIOLOGY, 1970, 48 (03) :443-+

[7] DNA SEQUENCING WITH CHAIN-TERMINATING INHIBITORS [J].

SANGER, F ;

NICKLEN, S ;

COULSON, AR .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1977, 74 (12) :5463-5467

[8] DNA Data Bank of Japan at work on genome sequence data [J].

Tateno, Y ;

Fukami-Kobayashi, K ;

Miyazaki, S ;

Sugawara, H ;

Gojobori, T .

NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :16-20

[9] DNA Data Bank of Japan (DDBJ) for genome scale research in life science [J].

Tateno, Y ;

Imanishi, T ;

Miyazaki, S ;

Fukami-Kobayashi, K ;

Saitou, N ;

Sugawara, H ;

Gojobori, T .

NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :27-30

[10] DNA Data Bank of Japan in the age of information biology [J].

Tateno, Y ;

Gojobori, T .

NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :14-17

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