A trade-off between neutrality and adaptability limits the optimization of viral quasispecies

被引:15
作者
Aguirre, Jacobo [1 ]
Lazaro, Ester [1 ]
Manrubia, Susanna C. [1 ]
机构
[1] INTA, CSIC, Ctr Astrobiol, Madrid 28850, Spain
关键词
Bottleneck; Growth rate; Fitness; Mutation-selection equilibrium; Genetic robustness; Out-of-equilibrium competition; Recoverytime; SINGLE-NUCLEOTIDE SUBSTITUTIONS; EVOLUTIONARY DYNAMICS; MUTATION-RATES; R-SELECTION; FITNESS; VIRUS; RNA; POPULATIONS; ROBUSTNESS; HIV-1;
D O I
10.1016/j.jtbi.2009.07.034
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Theoretical studies of quasispecies usually focus on two properties of those populations at the mutation-selection equilibrium, namely asymptotic growth rate and population diversity. It has been postulated that, as a consequence of the high error rate of quasispecies replication, an increase of neutrality facilitates population optimization by reducing the amount of mutations with a deleterious effect on fitness. In this study we analyse how the optimization of equilibrium properties is affected when a quasispecies evolves in an environment perturbed through frequent bottleneck events. By means of a simple model we demonstrate that high neutrality may be detrimental when the population has to overcome repeated reductions in the population size, and that the property to be optimized in this situation is the time required to regenerate the quasispecies, i.e. its adaptability. In the scenario described, neutrality and adaptability cannot be simultaneously optimized. When fitness is equated with long-term survivability, high neutrality is the appropriate strategy in constant environments, while populations evolving in fluctuating environments are fitter when their neutrality is low, such that they can respond faster to perturbations. Our results might be relevant to better comprehend how a minority virus could displace the circulating quasispecies, a fact observed in natural infections and essential in viral evolution. (C) 2009 Elsevier Ltd. All rights reserved.
引用
收藏
页码:148 / 155
页数:8
相关论文
共 71 条
[1]   Out-of-equilibrium competitive dynamics of quasispecies [J].
Aguirre, J. ;
Manrubia, S. C. .
EPL, 2007, 77 (03)
[2]   Rapid generation of genetic heterogeneity in progenies from individual cDNA clones of peach latent mosaic viroid in its natural host [J].
Ambrós, S ;
Hernández, C ;
Flores, R .
JOURNAL OF GENERAL VIROLOGY, 1999, 80 :2239-2252
[3]   AIR SAMPLING FOR RESPIRATORY DISEASE AGENTS IN ARMY RECRUITS [J].
ARTENSTEIN, MS ;
MILLER, WS .
BACTERIOLOGICAL REVIEWS, 1966, 30 (03) :571-+
[4]  
Biebricher CK, 2006, CURR TOP MICROBIOL, V299, P1
[5]   Hepatitis C virus coinfection and superinfection [J].
Blackard, Jason T. ;
Sherman, Kenneth E. .
JOURNAL OF INFECTIOUS DISEASES, 2007, 195 (04) :519-524
[6]   Direct evolution of genetic robustness in microRNA [J].
Borenstein, E ;
Ruppin, E .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (17) :6593-6598
[7]   Distribution of fitness and virulence effects caused by single-nucleotide substitutions in tobacco etch virus [J].
Carrasco, Purificacion ;
de la Iglesia, Francisca ;
Elena, Santiago F. .
JOURNAL OF VIROLOGY, 2007, 81 (23) :12979-12984
[8]   Role of minority populations of human immunodeficiency virus type 1 in the evolution of viral resistance to protease inhibitors [J].
Charpentier, C ;
Dwyer, DE ;
Mammano, F ;
Lecossier, D ;
Clavel, F ;
Hance, AJ .
JOURNAL OF VIROLOGY, 2004, 78 (08) :4234-4247
[9]   The fittest versus the flattest:: Experimental confirmation of the quasispecies effect with subviral pathogens [J].
Codoner, Francisco M. ;
Daros, Jose-Antonio ;
Sole, Ricard V. ;
Elena, Santiago F. .
PLOS PATHOGENS, 2006, 2 (12) :1187-1193
[10]   HIV POPULATION-DYNAMICS IN-VIVO - IMPLICATIONS FOR GENETIC-VARIATION, PATHOGENESIS, AND THERAPY [J].
COFFIN, JM .
SCIENCE, 1995, 267 (5197) :483-489