GO::TermFinder - open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

被引：1546

作者：

Boyle, EI

Weng, SA

Gollub, J

Jin, H

Botstein, D

Cherry, JM

Sherlock, G ^{[1
]}

机构：

[1] Stanford Univ, Dept Genet, Sch Med, Stanford, CA 94305 USA

[2] Stanford Univ, Dept Biochem, Sch Med, Stanford, CA 94305 USA

来源：

BIOINFORMATICS | 2004年 / 20卷 / 18期

基金：

美国国家卫生研究院;

关键词：

D O I：

10.1093/bioinformatics/bth456

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

GO::TermFinder comprises a set of object-oriented Perl modules for accessing Gene Ontology (GO) information and evaluating and visualizing the collective annotation of a list of genes to GO terms. It can be used to draw conclusions from microarray and other biological data, calculating the statistical significance of each annotation. GO::TermFinder can be used on any system on which Perl can be run, either as a command line application, in single or batch mode, or as a web-based CGI script.

引用

页码：3710 / 3715

页数：6

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