DDBJ launches a new archive database with analytical tools for next-generation sequence data

被引：63

作者：

Kaminuma, Eli

Mashima, Jun

Kodama, Yuichi

Gojobori, Takashi

Ogasawara, Osamu

Okubo, Kousaku

Takagi, Toshihisa

Nakamura, Yasukazu ^{[1
]}

机构：

[1] Natl Inst Genet, Ctr Informat Biol, Res Org Informat & Syst, Mishima, Shizuoka 4118510, Japan

来源：

NUCLEIC ACIDS RESEARCH | 2010年 / 38卷

关键词：

GENOME;

D O I：

10.1093/nar/gkp847

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The DNA Data Bank of Japan (DDBJ) (http://www.ddbj.nig.ac.jp) has collected and released 1 701 110 entries/1 116 138 614 bases between July 2008 and June 2009. A few highlighted data releases from DDBJ were the complete genome sequence of an endosymbiont within protist cells in the termite gut and Cap Analysis Gene Expression tags for human and mouse deposited from the Functional Annotation of the Mammalian cDNA consortium. In this period, we started a novel user announcement service using Really Simple Syndication (RSS) to deliver a list of data released from DDBJ on a daily basis. Comprehensive visualization of a DDBJ release data was attempted by using a word cloud program. Moreover, a new archive for sequencing data from next-generation sequencers, the 'DDBJ Read Archive' (DRA), was launched. Concurrently, for read data registered in DRA, a semi-automatic annotation tool called the 'DDBJ Read Annotation Pipeline' was released as a preliminary step. The pipeline consists of two parts: basic analysis for reference genome mapping and de novo assembly and high-level analysis of structural and functional annotations. These new services will aid users' research and provide easier access to DDBJ databases.

引用

页码：D33 / D38

页数：6

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