共 97 条
The mammalian epigenome
被引:1591
作者:

Bernstein, Bradley E.
论文数: 0 引用数: 0
h-index: 0
机构:
Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Meissner, Alexander
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Lander, Eric S.
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA
机构:
[1] Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA
[2] Massachusetts Gen Hosp, Canc Res Ctr, Charlestown, MA 02129 USA
[3] Harvard Univ, Sch Med, Dept Pathol, Boston, MA 02115 USA
[4] Harvard Univ, Broad Inst, Cambridge, MA 02139 USA
[5] MIT, Cambridge, MA 02139 USA
[6] MIT, Whitehead Inst Biomed Res, Cambridge, MA 02139 USA
来源:
关键词:
D O I:
10.1016/j.cell.2007.01.033
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Chemical modifications to DNA and histone proteins form a complex regulatory network that modulates chromatin structure and genome function. The epigenome refers to the complete description of these potentially heritable changes across the genome. The composition of the epigenome within a given cell is a function of genetic determinants, lineage, and environment. With the sequencing of the human genome completed, investigators now seek a comprehensive view of the epigenetic changes that determine how genetic information is made manifest across an incredibly varied background of developmental stages, tissue types, and disease states. Here we review current research efforts, with an emphasis on large-scale studies, emerging technologies, and challenges ahead. © 2007 Elsevier Inc. All rights reserved.
引用
收藏
页码:669 / 681
页数:13
相关论文
共 97 条
[1]
Chromatin signatures of pluripotent cell lines
[J].
Azuara, V
;
Perry, P
;
Sauer, S
;
Spivakov, M
;
Jorgensen, HF
;
John, RM
;
Gouti, M
;
Casanova, M
;
Warnes, G
;
Merkenschlager, M
;
Fisher, AG
.
NATURE CELL BIOLOGY,
2006, 8 (05)
:532-U189

Azuara, V
论文数: 0 引用数: 0
h-index: 0
机构:
Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

Perry, P
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

Sauer, S
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

Spivakov, M
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

Jorgensen, HF
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

John, RM
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

Gouti, M
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

Casanova, M
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

Warnes, G
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

Merkenschlager, M
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England

Fisher, AG
论文数: 0 引用数: 0
h-index: 0
机构: Imperial Coll Sch Med, Hammersmith Hosp, MRC Clin Sci Ctr, Lymphocyte Dev Grp, London W12 0NN, England
[2]
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
[J].
Bernstein, BE
;
Mikkelsen, TS
;
Xie, XH
;
Kamal, M
;
Huebert, DJ
;
Cuff, J
;
Fry, B
;
Meissner, A
;
Wernig, M
;
Plath, K
;
Jaenisch, R
;
Wagschal, A
;
Feil, R
;
Schreiber, SL
;
Lander, ES
.
CELL,
2006, 125 (02)
:315-326

Bernstein, BE
论文数: 0 引用数: 0
h-index: 0
机构:
Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Mikkelsen, TS
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Xie, XH
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Kamal, M
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Huebert, DJ
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Cuff, J
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Fry, B
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Meissner, A
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Wernig, M
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Plath, K
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Jaenisch, R
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Wagschal, A
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Feil, R
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Schreiber, SL
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA

Lander, ES
论文数: 0 引用数: 0
h-index: 0
机构: Massachusetts Gen Hosp, Mol Pathol Unit, Charlestown, MA 02129 USA
[3]
Genomic maps and comparative analysis of histone modifications in human and mouse
[J].
Bernstein, BE
;
Kamal, M
;
Lindblad-Toh, K
;
Bekiranov, S
;
Bailey, DK
;
Huebert, DJ
;
McMahon, S
;
Karlsson, EK
;
Kulbokas, EJ
;
Gingeras, TR
;
Schreiber, SL
;
Lander, ES
.
CELL,
2005, 120 (02)
:169-181

Bernstein, BE
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Kamal, M
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Lindblad-Toh, K
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Bekiranov, S
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Bailey, DK
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Huebert, DJ
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

论文数: 引用数:
h-index:
机构:

Karlsson, EK
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Kulbokas, EJ
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Gingeras, TR
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Schreiber, SL
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Lander, ES
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Howard Hughes Med Inst, Dept Chem & Biol Chem, Cambridge, MA 02138 USA
[4]
Human embryonic stem cells have a unique epigenetic signature
[J].
Bibikova, Marina
;
Chudin, Eugene
;
Wu, Bonnie
;
Zhou, Lixin
;
Garcia, Eliza Wickham
;
Liu, Ying
;
Shin, Soojung
;
Plaia, Todd W.
;
Auerbach, Jonathan M.
;
Arking, Dan E.
;
Gonzalez, Rodolfo
;
Crook, Jeremy
;
Davidson, Bruce
;
Schulz, Thomas C.
;
Robins, Allan
;
Khanna, Aparna
;
Sartipy, Peter
;
Hyllner, Johan
;
Vanguri, Padmavathy
;
Savant-Bhonsale, Smita
;
Smith, Alan K.
;
Chakravarti, Aravinda
;
Maitra, Anirban
;
Rao, Mahendra
;
Barker, David L.
;
Loring, Jeanne F.
;
Fan, Jian-Bing
.
GENOME RESEARCH,
2006, 16 (09)
:1075-1083

Bibikova, Marina
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Chudin, Eugene
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Wu, Bonnie
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Zhou, Lixin
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Garcia, Eliza Wickham
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Liu, Ying
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Shin, Soojung
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Plaia, Todd W.
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Auerbach, Jonathan M.
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Arking, Dan E.
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Gonzalez, Rodolfo
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Crook, Jeremy
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Davidson, Bruce
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Schulz, Thomas C.
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Robins, Allan
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Khanna, Aparna
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Sartipy, Peter
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Hyllner, Johan
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Vanguri, Padmavathy
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Savant-Bhonsale, Smita
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Smith, Alan K.
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Chakravarti, Aravinda
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Maitra, Anirban
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Rao, Mahendra
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Barker, David L.
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Loring, Jeanne F.
论文数: 0 引用数: 0
h-index: 0
机构: Illumina Inc, San Diego, CA 92121 USA

Fan, Jian-Bing
论文数: 0 引用数: 0
h-index: 0
机构:
Illumina Inc, San Diego, CA 92121 USA Illumina Inc, San Diego, CA 92121 USA
[5]
DNA methylation patterns and epigenetic memory
[J].
Bird, A
.
GENES & DEVELOPMENT,
2002, 16 (01)
:6-21

Bird, A
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Edinburgh, Wellcome Trust Ctr Cell Biol, Edinburgh EH9 3JR, Midlothian, Scotland Univ Edinburgh, Wellcome Trust Ctr Cell Biol, Edinburgh EH9 3JR, Midlothian, Scotland
[6]
The MT domain of the proto-oncoprotein MLL binds to CpG-containing DNA and discriminates against methylation
[J].
Birke, M
;
Schreiner, S
;
García-Cuéllar, MP
;
Mahr, K
;
Titgemeyer, F
;
Slany, RK
.
NUCLEIC ACIDS RESEARCH,
2002, 30 (04)
:958-965

Birke, M
论文数: 0 引用数: 0
h-index: 0
机构: Univ Erlangen Nurnberg, Dept Genet, D-91058 Erlangen, Germany

Schreiner, S
论文数: 0 引用数: 0
h-index: 0
机构: Univ Erlangen Nurnberg, Dept Genet, D-91058 Erlangen, Germany

García-Cuéllar, MP
论文数: 0 引用数: 0
h-index: 0
机构: Univ Erlangen Nurnberg, Dept Genet, D-91058 Erlangen, Germany

Mahr, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Erlangen Nurnberg, Dept Genet, D-91058 Erlangen, Germany

Titgemeyer, F
论文数: 0 引用数: 0
h-index: 0
机构: Univ Erlangen Nurnberg, Dept Genet, D-91058 Erlangen, Germany

Slany, RK
论文数: 0 引用数: 0
h-index: 0
机构: Univ Erlangen Nurnberg, Dept Genet, D-91058 Erlangen, Germany
[7]
Reprogramming efficiency following somatic cell nuclear transfer is influenced by the differentiation and methylation state of the donor nucleus
[J].
Blelloch, Robert
;
Wang, Zhongde
;
Meissner, Alex
;
Pollard, Steven
;
Smith, Austin
;
Jaenisch, Rudolf
.
STEM CELLS,
2006, 24 (09)
:2007-2013

Blelloch, Robert
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Whitehead Inst Biomed Res, Cambridge, MA USA

Wang, Zhongde
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Whitehead Inst Biomed Res, Cambridge, MA USA

Meissner, Alex
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Whitehead Inst Biomed Res, Cambridge, MA USA

Pollard, Steven
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Whitehead Inst Biomed Res, Cambridge, MA USA

Smith, Austin
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Whitehead Inst Biomed Res, Cambridge, MA USA

Jaenisch, Rudolf
论文数: 0 引用数: 0
h-index: 0
机构: MIT, Whitehead Inst Biomed Res, Cambridge, MA USA
[8]
CpG island methylation in human lymphocytes is highly correlated with DNA sequence, repeats, and predicted DNA structure
[J].
Bock, Christoph
;
Paulsen, Martina
;
Tierling, Sascha
;
Mikeska, Thomas
;
Lengauer, Thomas
;
Walter, Joern
.
PLOS GENETICS,
2006, 2 (03)
:243-252

Bock, Christoph
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Informat, Saarbrucken, Germany Max Planck Inst Informat, Saarbrucken, Germany

Paulsen, Martina
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Informat, Saarbrucken, Germany

Tierling, Sascha
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Informat, Saarbrucken, Germany

Mikeska, Thomas
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Informat, Saarbrucken, Germany

Lengauer, Thomas
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Informat, Saarbrucken, Germany

Walter, Joern
论文数: 0 引用数: 0
h-index: 0
机构: Max Planck Inst Informat, Saarbrucken, Germany
[9]
Polycomb complexes repress developmental regulators in murine embryonic stem cells
[J].
Boyer, LA
;
Plath, K
;
Zeitlinger, J
;
Brambrink, T
;
Medeiros, LA
;
Lee, TI
;
Levine, SS
;
Wernig, M
;
Tajonar, A
;
Ray, MK
;
Bell, GW
;
Otte, AP
;
Vidal, M
;
Gifford, DK
;
Young, RA
;
Jaenisch, R
.
NATURE,
2006, 441 (7091)
:349-353

Boyer, LA
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Plath, K
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Zeitlinger, J
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Brambrink, T
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Medeiros, LA
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Lee, TI
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Levine, SS
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Wernig, M
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Tajonar, A
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Ray, MK
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Bell, GW
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Otte, AP
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Vidal, M
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Gifford, DK
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Young, RA
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA

Jaenisch, R
论文数: 0 引用数: 0
h-index: 0
机构: Whitehead Inst Biomed Res, Cambridge, MA 02142 USA
[10]
Genome-wide mapping of Polycomb target genes unravels their roles in cell fate transitions
[J].
Bracken, AP
;
Dietrich, N
;
Pasini, D
;
Hansen, KH
;
Helin, K
.
GENES & DEVELOPMENT,
2006, 20 (09)
:1123-1136

Bracken, AP
论文数: 0 引用数: 0
h-index: 0
机构: BRIC, DK-2100 Copenhagen O, Denmark

Dietrich, N
论文数: 0 引用数: 0
h-index: 0
机构: BRIC, DK-2100 Copenhagen O, Denmark

Pasini, D
论文数: 0 引用数: 0
h-index: 0
机构: BRIC, DK-2100 Copenhagen O, Denmark

Hansen, KH
论文数: 0 引用数: 0
h-index: 0
机构: BRIC, DK-2100 Copenhagen O, Denmark

Helin, K
论文数: 0 引用数: 0
h-index: 0
机构:
BRIC, DK-2100 Copenhagen O, Denmark BRIC, DK-2100 Copenhagen O, Denmark