Human genetic variation and its contribution to complex traits

被引:723
作者
Frazer, Kelly A. [1 ]
Murray, Sarah S.
Schork, Nicholas J.
Topol, Eric J.
机构
[1] Scripps Translat Sci Inst, La Jolla, CA 92037 USA
基金
美国国家卫生研究院;
关键词
GENOME-WIDE ASSOCIATION; COPY-NUMBER VARIATION; PROSTATE-CANCER RISK; STRUCTURAL VARIATION; SUSCEPTIBILITY LOCI; COMMON VARIANT; RARE VARIANTS; LINKAGE DISEQUILIBRIUM; POPULATION-GENETICS; SKIN PIGMENTATION;
D O I
10.1038/nrg2554
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The last few years have seen extensive efforts to catalogue human genetic variation and correlate it with phenotypic differences. Most common SNPs have now been assessed in genome-wide studies for statistical associations with many complex traits, including many important common diseases. Although these studies have provided new biological insights, only a limited amount of the heritable component of any complex trait has been identified and it remains a challenge to elucidate the functional link between associated variants and phenotypic traits. Technological advances, such as the ability to detect rare and structural variants, and a clear understanding of the challenges in linking different types of variation with phenotype, will be essential for future progress.
引用
收藏
页码:241 / 251
页数:11
相关论文
共 132 条
[1]   A haplotype map of the human genome [J].
Altshuler, D ;
Brooks, LD ;
Chakravarti, A ;
Collins, FS ;
Daly, MJ ;
Donnelly, P ;
Gibbs, RA ;
Belmont, JW ;
Boudreau, A ;
Leal, SM ;
Hardenbol, P ;
Pasternak, S ;
Wheeler, DA ;
Willis, TD ;
Yu, FL ;
Yang, HM ;
Zeng, CQ ;
Gao, Y ;
Hu, HR ;
Hu, WT ;
Li, CH ;
Lin, W ;
Liu, SQ ;
Pan, H ;
Tang, XL ;
Wang, J ;
Wang, W ;
Yu, J ;
Zhang, B ;
Zhang, QR ;
Zhao, HB ;
Zhao, H ;
Zhou, J ;
Gabriel, SB ;
Barry, R ;
Blumenstiel, B ;
Camargo, A ;
Defelice, M ;
Faggart, M ;
Goyette, M ;
Gupta, S ;
Moore, J ;
Nguyen, H ;
Onofrio, RC ;
Parkin, M ;
Roy, J ;
Stahl, E ;
Winchester, E ;
Ziaugra, L ;
Shen, Y .
NATURE, 2005, 437 (7063) :1299-1320
[2]   Genetic Mapping in Human Disease [J].
Altshuler, David ;
Daly, Mark J. ;
Lander, Eric S. .
SCIENCE, 2008, 322 (5903) :881-888
[3]   Guilt beyond a reasonable doubt [J].
Altshuler, David ;
Daly, Mark .
NATURE GENETICS, 2007, 39 (07) :813-815
[4]   A common variant associated with prostate cancer in European and African populations [J].
Amundadottir, Laufey T. ;
Sulem, Patrick ;
Gudmundsson, Julius ;
Helgason, Agnar ;
Baker, Adam ;
Agnarsson, Bjarni A. ;
Sigurdsson, Asgeir ;
Benediktsdottir, Kristrun R. ;
Cazier, Jean-Baptiste ;
Sainz, Jesus ;
Jakobsdottir, Margret ;
Kostic, Jelena ;
Magnusdottir, Droplaug N. ;
Ghosh, Shyamali ;
Agnarsson, Kari ;
Birgisdottir, Birgitta ;
Le Roux, Louise ;
Olafsdottir, Adalheidur ;
Blondal, Thorarinn ;
Andresdottir, Margret ;
Gretarsdottir, Olafia Svandis ;
Bergthorsson, Jon T. ;
Gudbjartsson, Daniel ;
Gylfason, Arnaldur ;
Thorleifsson, Gudmar ;
Manolescu, Andrei ;
Kristjansson, Kristleifur ;
Geirsson, Gudmundur ;
Isaksson, Helgi ;
Douglas, Julie ;
Johansson, Jan-Erik ;
Balter, Katarina ;
Wiklund, Fredrik ;
Montie, James E. ;
Yu, Xiaoying ;
Suarez, Brian K. ;
Ober, Carole ;
Cooney, Kathleen A. ;
Gronberg, Henrik ;
Catalona, William J. ;
Einarsson, Gudmundur V. ;
Barkardottir, Rosa B. ;
Gulcher, Jeffrey R. ;
Kong, Augustine ;
Thorsteinsdottir, Unnur ;
Stefansson, Kari .
NATURE GENETICS, 2006, 38 (06) :652-658
[5]   Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts [J].
Aulchenko, Yurii S. ;
Ripatti, Samuli ;
Lindqvist, Ida ;
Boomsma, Dorret ;
Heid, Iris M. ;
Pramstaller, Peter P. ;
Penninx, Brenda W. J. H. ;
Janssens, A. Cecile J. W. ;
Wilson, James F. ;
Spector, Tim ;
Martin, Nicholas G. ;
Pedersen, Nancy L. ;
Kyvik, Kirsten Ohm ;
Kaprio, Jaakko ;
Hofman, Albert ;
Freimer, Nelson B. ;
Jarvelin, Marjo-Riitta ;
Gyllensten, Ulf ;
Campbell, Harry ;
Rudan, Igor ;
Johansson, Asa ;
Marroni, Fabio ;
Hayward, Caroline ;
Vitart, Veronique ;
Jonasson, Inger ;
Pattaro, Cristian ;
Wright, Alan ;
Hastie, Nick ;
Pichler, Irene ;
Hicks, Andrew A. ;
Falchi, Mario ;
Willemsen, Gonneke ;
Hottenga, Jouke-Jan ;
de Geus, Eco J. C. ;
Montgomery, Grant W. ;
Whitfield, John ;
Magnusson, Patrik ;
Saharinen, Juha ;
Perola, Markus ;
Silander, Kaisa ;
Isaacs, Aaron ;
Sijbrands, Eric J. G. ;
Uitterlinden, Andre G. ;
Witteman, Jacqueline C. M. ;
Oostra, Ben A. ;
Elliott, Paul ;
Ruokonen, Aimo ;
Sabatti, Chiara ;
Gieger, Christian ;
Meitinger, Thomas .
NATURE GENETICS, 2009, 41 (01) :47-55
[6]   Genetic variation in the KIF1B locus influences susceptibility to multiple sclerosis [J].
Aulchenko, Yurii S. ;
Hoppenbrouwers, Ilse A. ;
Ramagopalan, Sreeram V. ;
Broer, Linda ;
Jafari, Naghmeh ;
Hillert, Jan ;
Link, Jenny ;
Lundstrom, Wangko ;
Greiner, Eva ;
Sadovnick, A. Dessa ;
Goossens, Dirk ;
Van Broeckhoven, Christine ;
Del-Favero, Jurgen ;
Ebers, George C. ;
Oostra, Ben A. ;
van Duijn, Cornelia M. ;
Hintzen, Rogier Q. .
NATURE GENETICS, 2008, 40 (12) :1402-1403
[7]   Recent segmental duplications in the human genome [J].
Bailey, JA ;
Gu, ZP ;
Clark, RA ;
Reinert, K ;
Samonte, RV ;
Schwartz, S ;
Adams, MD ;
Myers, EW ;
Li, PW ;
Eichler, EE .
SCIENCE, 2002, 297 (5583) :1003-1007
[8]   A robust statistical method for case-control association testing with copy number variation [J].
Barnes, Chris ;
Plagnol, Vincent ;
Fitzgerald, Tomas ;
Redon, Richard ;
Marchini, Jonathan ;
Clayton, David ;
Hurles, Matthew E. .
NATURE GENETICS, 2008, 40 (10) :1245-1252
[9]   Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease [J].
Barrett, Jeffrey C. ;
Hansoul, Sarah ;
Nicolae, Dan L. ;
Cho, Judy H. ;
Duerr, Richard H. ;
Rioux, John D. ;
Brant, Steven R. ;
Silverberg, Mark S. ;
Taylor, Kent D. ;
Barmada, M. Michael ;
Bitton, Alain ;
Dassopoulos, Themistocles ;
Datta, Lisa Wu ;
Green, Todd ;
Griffiths, Anne M. ;
Kistner, Emily O. ;
Murtha, Michael T. ;
Regueiro, Miguel D. ;
Rotter, Jerome I. ;
Schumm, L. Philip ;
Steinhart, A. Hillary ;
Targan, Stephan R. ;
Xavier, Ramnik J. ;
Libioulle, Cecile ;
Sandor, Cynthia ;
Lathrop, Mark ;
Belaiche, Jacques ;
Dewit, Olivier ;
Gut, Ivo ;
Heath, Simon ;
Laukens, Debby ;
Mni, Myriam ;
Rutgeerts, Paul ;
Van Gossum, Andre ;
Zelenika, Diana ;
Franchimont, Denis ;
Hugot, Jean-Pierre ;
de Vos, Martine ;
Vermeire, Severine ;
Louis, Edouard ;
Cardon, Lon R. ;
Anderson, Carl A. ;
Drummond, Hazel ;
Nimmo, Elaine ;
Ahmad, Tariq ;
Prescott, Natalie J. ;
Onnie, Clive M. ;
Fisher, Sheila A. ;
Marchini, Jonathan ;
Ghori, Jilur .
NATURE GENETICS, 2008, 40 (08) :955-962
[10]   Evaluating coverage of genome-wide association studies [J].
Barrett, Jeffrey C. ;
Cardon, Lon R. .
NATURE GENETICS, 2006, 38 (06) :659-662