miRBase: microRNA sequences, targets and gene nomenclature

被引:3671
作者
Griffiths-Jones, Sam [1 ]
Grocock, Russell J. [1 ]
van Dongen, Stijn [1 ]
Bateman, Alex [1 ]
Enright, Anton J. [1 ]
机构
[1] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England
基金
英国惠康基金;
关键词
D O I
10.1093/nar/gkj112
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The miRBase database aims to provide integrated interfaces to comprehensive microRNA sequence data, annotation and predicted gene targets. miRBase takes over functionality from the microRNA Registry and fulfils three main roles: the miRBase Registry acts as an independent arbiter of microRNA gene nomenclature, assigning names prior to publication of novel miRNA sequences. miRBase Sequences is the primary online repository for miRNA sequence data and annotation. miRBase Targets is a comprehensive new database of predicted miRNA target genes. miRBase is available at http://microrna.sanger.ac.uk/.
引用
收藏
页码:D140 / D144
页数:5
相关论文
共 27 条
[1]   A uniform system for microRNA annotation [J].
Ambros, V ;
Bartel, B ;
Bartel, DP ;
Burge, CB ;
Carrington, JC ;
Chen, XM ;
Dreyfuss, G ;
Eddy, SR ;
Griffiths-Jones, S ;
Marshall, M ;
Matzke, M ;
Ruvkun, G ;
Tuschl, T .
RNA, 2003, 9 (03) :277-279
[2]   The functions of animal microRNAs [J].
Ambros, V .
NATURE, 2004, 431 (7006) :350-355
[3]   MicroRNAs: Genomics, biogenesis, mechanism, and function (Reprinted from Cell, vol 116, pg 281-297, 2004) [J].
Bartel, David P. .
CELL, 2007, 131 (04) :11-29
[4]   Principles of MicroRNA-target recognition [J].
Brennecke, J ;
Stark, A ;
Russell, RB ;
Cohen, SM .
PLOS BIOLOGY, 2005, 3 (03) :404-418
[5]  
Enright AJ, 2004, GENOME BIOL, V5
[6]   Post-transcriptional gene silencing by siRNAs and miRNAs [J].
Filipowicz, W ;
Jaskiewicz, L ;
Kolb, FA ;
Pillai, RS .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2005, 15 (03) :331-341
[7]   The microRNA Registry [J].
Griffiths-Jones, S .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D109-D111
[8]   A microRNA polycistron as a potential human oncogene [J].
He, L ;
Thomson, JM ;
Hemann, MT ;
Hernando-Monge, E ;
Mu, D ;
Goodson, S ;
Powers, S ;
Cordon-Cardo, C ;
Lowe, SW ;
Hannon, GJ ;
Hammond, SM .
NATURE, 2005, 435 (7043) :828-833
[9]   Ensembl 2005 [J].
Hubbard, T ;
Andrews, D ;
Caccamo, M ;
Cameron, G ;
Chen, Y ;
Clamp, M ;
Clarke, L ;
Coates, G ;
Cox, T ;
Cunningham, F ;
Curwen, V ;
Cutts, T ;
Down, T ;
Durbin, R ;
Fernandez-Suarez, XM ;
Gilbert, J ;
Hammond, M ;
Herrero, J ;
Hotz, H ;
Howe, K ;
Iyer, V ;
Jekosch, K ;
Kahari, A ;
Kasprzyk, A ;
Keefe, D ;
Keenan, S ;
Kokocinsci, F ;
London, D ;
Longden, I ;
McVicker, G ;
Melsopp, C ;
Meidl, P ;
Potter, S ;
Proctor, G ;
Rae, M ;
Rios, D ;
Schuster, M ;
Searle, S ;
Severin, J ;
Slater, G ;
Smedley, D ;
Smith, J ;
Spooner, W ;
Stabenau, A ;
Stalker, J ;
Storey, R ;
Trevanion, S ;
Ureta-Vidal, A ;
Vogel, J ;
White, S .
NUCLEIC ACIDS RESEARCH, 2005, 33 :D447-D453
[10]   The UCSC Genome Browser Database [J].
Karolchik, D ;
Baertsch, R ;
Diekhans, M ;
Furey, TS ;
Hinrichs, A ;
Lu, YT ;
Roskin, KM ;
Schwartz, M ;
Sugnet, CW ;
Thomas, DJ ;
Weber, RJ ;
Haussler, D ;
Kent, WJ .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :51-54