Trends in protein evolution inferred from sequence and structure analysis

被引：116

作者：

Aravind, L ^{[1
]}

Mazumder, R ^{[1
]}

Vasudevan, S ^{[1
]}

Koonin, EV ^{[1
]}

机构：

[1] Natl Lib Med, Natl Ctr Biotechnol Informat, Bethesda, MD 20894 USA

来源：

CURRENT OPINION IN STRUCTURAL BIOLOGY | 2002年 / 12卷 / 03期

关键词：

D O I：

10.1016/S0959-440X(02)00334-2

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Complementary developments in comparative genomics, protein structure determination and in-depth comparison of protein sequences and structures have provided a better understanding of the prevailing trends in the emergence and diversification of protein domains. The investigation of deep relationships among different classes of proteins involved in key cellular functions, such as nucleic acid polymerases and other nucleotide-dependent enzymes, indicates that a substantial set of diverse protein domains evolved within the primordial, ribozyme-dominated RNA world.

引用

页码：392 / 399

页数：8

共 55 条

[1] Structure of the S15,S18-rRNA complex: Assembly of the 30S ribosome central domain [J].

Agalarov, SC ;

Prasad, GS ;

Funke, PM ;

Stout, CD ;

Williamson, JR .

SCIENCE, 2000, 288 (5463) :107-112

[2] Cache -: a signaling domain common to animal Ca2+ channel subunits and a class of prokaryotic chemotaxis receptors [J].

Anantharaman, V ;

Aravind, L .

TRENDS IN BIOCHEMICAL SCIENCES, 2000, 25 (11) :535-537

[3] Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains [J].

Anantharaman, V ;

Koonin, EV ;

Aravind, L .

JOURNAL OF MOLECULAR BIOLOGY, 2001, 307 (05) :1271-1292

[4] Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: Implications for protein evolution in the RNA world [J].

Aravind, L ;

Anantharaman, V ;

Koonin, EV .

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2002, 48 (01) :1-14

[5] Toprim - a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins [J].

Aravind, L ;

Leipe, DD ;

Koonin, EV .

NUCLEIC ACIDS RESEARCH, 1998, 26 (18) :4205-4213

[6] Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system [J].

Aravind, L ;

Koonin, EV .

GENOME RESEARCH, 2001, 11 (08) :1365-1374

[7] SAP - a putative DNA-binding motif involved in chromosomal organization [J].

Aravind, L ;

Koonin, EV .

TRENDS IN BIOCHEMICAL SCIENCES, 2000, 25 (03) :112-114

[8] Crystal structure of a DNA-dependent RNA polymerase (DNA primase) [J].

Augustin, MA ;

Huber, R ;

Kaiser, JT .

NATURE STRUCTURAL BIOLOGY, 2001, 8 (01) :57-61

[9] THE CYTIDYLYLTRANSFERASE SUPERFAMILY - IDENTIFICATION OF THE NUCLEOTIDE-BINDING SITE AND FOLD PREDICTION [J].

BORK, P ;

HOLM, L ;

KOONIN, EV ;

SANDER, C .

PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1995, 22 (03) :259-266

[10] A P-LOOP-LIKE MOTH IN A WIDESPREAD ATP PYROPHOSPHATASE DOMAIN - IMPLICATIONS FOR THE EVOLUTION OF SEQUENCE MOTIFS AND ENZYME-ACTIVITY [J].

BORK, P ;

KOONIN, EV .

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1994, 20 (04) :347-355

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