Matching theory and experiment in protein folding

被引:134
作者
Alm, E [1 ]
Baker, D [1 ]
机构
[1] Univ Washington, Dept Biochem, Seattle, WA 98195 USA
关键词
D O I
10.1016/S0959-440X(99)80027-X
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
There has been considerable progress made over the past year in linking experimental and theoretical approaches to protein folding. Recent results from several independent lines of investigation suggest that protein folding mechanisms and landscapes are largely determined by the topology of the native state and are relatively insensitive to details of the interatomic interactions. This dependence on low-resolution structural features, rather than high-resolution detail, suggests that it should be possible to describe the fundamental physics of the folding process using relatively low-resolution models. Recent experiments have set benchmarks for testing new models and progress has been made in developing theoretical models for interpreting and predicting experimental results.
引用
收藏
页码:189 / 196
页数:8
相关论文
共 70 条
[1]   SPECIFIC NUCLEUS AS THE TRANSITION-STATE FOR PROTEIN-FOLDING - EVIDENCE FROM THE LATTICE MODEL [J].
ABKEVICH, VI ;
GUTIN, AM ;
SHAKHNOVICH, EI .
BIOCHEMISTRY, 1994, 33 (33) :10026-10036
[2]   IMPACT OF LOCAL AND NONLOCAL INTERACTIONS ON THERMODYNAMICS AND KINETICS OF PROTEIN-FOLDING [J].
ABKEVICH, VI ;
GUTIN, AM ;
SHAKHNOVICH, EI .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 252 (04) :460-471
[3]   DIFFUSION-COLLISION MODEL FOR THE FOLDING KINETICS OF THE LAMBDA-REPRESSOR OPERATOR-BINDING DOMAIN [J].
BASHFORD, D ;
WEAVER, DL ;
KARPLUS, M .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1984, 1 (05) :1243-1255
[4]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195
[5]   Protein folding dynamics: Quantitative comparison between theory and experiment [J].
Burton, RE ;
Myers, JK ;
Oas, TG .
BIOCHEMISTRY, 1998, 37 (16) :5337-5343
[6]   Prediction of local structure in proteins using a library of sequence-structure motifs [J].
Bystroff, C ;
Baker, D .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 281 (03) :565-577
[7]   THE EFFECTS OF INTERNAL CONSTRAINTS ON THE CONFIGURATIONS OF CHAIN MOLECULES [J].
CHAN, HS ;
DILL, KA .
JOURNAL OF CHEMICAL PHYSICS, 1990, 92 (05) :3118-3135
[8]  
Chan HS, 1998, PROTEINS, V30, P2, DOI 10.1002/(SICI)1097-0134(19980101)30:1<2::AID-PROT2>3.0.CO
[9]  
2-R
[10]  
Doyle R, 1997, PROTEINS, V29, P282, DOI 10.1002/(SICI)1097-0134(199711)29:3<282::AID-PROT3>3.0.CO