GenBank

被引：853

作者：

Benson, DA ^{[1
]}

Karsch-Mizrachi, I ^{[1
]}

Lipman, DJ ^{[1
]}

Ostell, J ^{[1
]}

Rapp, BA ^{[1
]}

Wheeler, DL ^{[1
]}

机构：

[1] Natl Lib Med, Natl Ctr Biotechnol Informat, NIH, Bethesda, MD 20894 USA

来源：

NUCLEIC ACIDS RESEARCH | 2000年 / 28卷 / 01期

关键词：

D O I：

10.1093/nar/28.1.15

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The GenBank(R) sequence database incorporates publicly available DNA sequences of >55 000 different organisms, primarily through direct submission of sequence data from individual laboratories and large-scale sequencing projects. Most submissions are made using the Banklt (Web) or Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Data exchange with the EMBL Data Library and the DNA Data Bank of Japan helps ensure comprehensive worldwide coverage. GenBank data is accessible through NCBI's integrated retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping and protein structure information, plus the biomedical literature via PubMed. Sequence similarity searching is provided by the BLAST family of programs. Complete bimonthly releases and daily updates of the GenBank database are available by FTP, NCBI also offers a wide range of WWW retrieval and analysis services based on GenBank data. The GenBank data-base and related resources are freely accessible via the NCBI home page at http://www.ncbi.nlm.nih.gov.

引用

页码：15 / 18

页数：4

共 15 条

[1] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[2] GenBank [J].

Benson, DA ;

Boguski, MS ;

Lipman, DJ ;

Ostell, J ;

Ouellette, BFF ;

Rapp, BA ;

Wheeler, DL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :12-17

[3] DBEST - DATABASE FOR EXPRESSED SEQUENCE TAGS [J].

BOGUSKI, MS ;

LOWE, TMJ ;

TOLSTOSHEV, CM .

NATURE GENETICS, 1993, 4 (04) :332-333

[4] AN STS-BASED MAP OF THE HUMAN GENOME [J].

HUDSON, TJ ;

STEIN, LD ;

GERETY, SS ;

MA, JL ;

CASTLE, AB ;

SILVA, J ;

SLONIM, DK ;

BAPTISTA, R ;

KRUGLYAK, L ;

XU, SH ;

HU, XT ;

COLBERT, AME ;

ROSENBERG, C ;

REEVEDALY, MP ;

ROZEN, S ;

HUI, L ;

WU, XY ;

VESTERGAARD, C ;

WILSON, KM ;

BAE, JS ;

MAITRA, S ;

GANIATSAS, S ;

EVANS, CA ;

DEANGELIS, MM ;

INGALLS, KA ;

NAHF, RW ;

HORTON, LT ;

ANDERSON, MO ;

COLLYMORE, AJ ;

YE, WJ ;

KOUYOUMJIAN, V ;

ZEMSTEVA, IS ;

TAM, J ;

DEVINE, R ;

COURTNEY, DF ;

RENAUD, MT ;

NGUYEN, H ;

OCONNOR, TJ ;

FIZAMES, C ;

FAURE, S ;

GYAPAY, G ;

DIB, C ;

MORISSETTE, J ;

ORLIN, JB ;

BIRREN, BW ;

GOODMAN, N ;

WEISSENBACH, J ;

HAWKINS, TL ;

FOOTE, S ;

PAGE, DC .

SCIENCE, 1995, 270 (5244) :1945-1954

[5]

Kans JA, 1998, METHOD BIOCHEM ANAL, V39, P319

[6] Database divisions and homology search files: A guide for the perplexed [J].

Ouellette, BFF ;

Boguski, MS .

GENOME RESEARCH, 1997, 7 (10) :952-955

[7] Pieces of the puzzle: expressed sequence tags and the catalog of human genes [J].

Schuler, GD .

JOURNAL OF MOLECULAR MEDICINE-JMM, 1997, 75 (10) :694-698

[8] GENOMIC SEQUENCE SAMPLING - A STRATEGY FOR HIGH-RESOLUTION SEQUENCE-BASED PHYSICAL MAPPING OF COMPLEX GENOMES [J].

SMITH, MW ;

HOLMSEN, AL ;

WEI, YH ;

PETERSON, M ;

EVANS, GA .

NATURE GENETICS, 1994, 7 (01) :40-47

[9] The EMBL Nucleotide Sequence Database [J].

Stoesser, G ;

Tuli, MA ;

Lopez, R ;

Sterk, P .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :18-24

[10]

STOESSER G, 2000, NUCLEIC ACIDS RES, V27, P25

← 1 2 →