The genome of the cucumber, Cucumis sativus L.

被引：1166

作者：

Huang, Sanwen ^{[1
]}

Li, Ruiqiang ^{[2
,3
]}

Zhang, Zhonghua ^{[1
]}

Li, Li ^{[2
]}

Gu, Xingfang ^{[1
]}

Fan, Wei ^{[2
]}

Lucas, William J. ^{[4
]}

Wang, Xiaowu ^{[1
]}

Xie, Bingyan ^{[1
]}

Ni, Peixiang ^{[2
]}

Ren, Yuanyuan ^{[2
]}

Zhu, Hongmei ^{[2
]}

Li, Jun ^{[2
]}

Lin, Kui ^{[5
]}

Jin, Weiwei ^{[6
]}

Fei, Zhangjun ^{[7
,8
]}

Li, Guangcun ^{[9
]}

Staub, Jack ^{[10
]}

Kilian, Andrzej ^{[11
]}

van der Vossen, Edwin A. G. ^{[12
]}

Wu, Yang ^{[5
]}

Guo, Jie ^{[5
]}

He, Jun ^{[1
]}

Jia, Zhiqi ^{[1
]}

Ren, Yi ^{[1
]}

Tian, Geng ^{[2
]}

Lu, Yao ^{[2
]}

Ruan, Jue ^{[2
,13
]}

Qian, Wubin ^{[2
]}

Wang, Mingwei ^{[2
]}

Huang, Quanfei ^{[2
]}

Li, Bo ^{[2
]}

Xuan, Zhaoling ^{[2
]}

Cao, Jianjun ^{[2
]}

Asan ^{[2
]}

Wu, Zhigang ^{[2
]}

Zhang, Juanbin ^{[2
]}

Cai, Qingle ^{[2
]}

Bai, Yinqi ^{[2
]}

Zhao, Bowen ^{[14
]}

Han, Yonghua ^{[6
]}

Li, Ying ^{[1
]}

Li, Xuefeng ^{[1
]}

Wang, Shenhao ^{[1
]}

Shi, Qiuxiang ^{[1
]}

Liu, Shiqiang ^{[1
]}

Cho, Won Kyong ^{[15
,16
]}

Kim, Jae-Yean ^{[15
,16
]}

Xu, Yong ^{[17
]}

Heller-Uszynska, Katarzyna ^{[11
]}

机构：

[1] Chinese Acad Agr Sci, Inst Vegetables & Flowers, Sino Dutch Joint Lab Hort Genom Technol, Minist Agr,Key Lab Hort Crops Genet Improvement, Beijing, Peoples R China

[2] BGI Shenzhen, Shenzhen, Peoples R China

[3] Univ So Denmark, Dept Biochem & Mol Biol, Odense, Denmark

[4] Univ Calif Davis, Coll Biol Sci, Dept Plant Biol, Davis, CA 95616 USA

[5] Beijing Normal Univ, Coll Life Sci, Beijing, Peoples R China

[6] China Agr Univ, Beijing Key Lab Crop Genet Improvement, Key Lab Crop Genet Improvement & Genome, Natl Maize Improvement Ctr China,Minist Agr, Beijing 100094, Peoples R China

[7] Cornell Univ, Boyce Thompson Inst Plant Res, Ithaca, NY 14853 USA

[8] Cornell Univ, USDA, Robert W Holley Ctr Agr & Hlth, Ithaca, NY USA

[9] Shandong Acad Agr Sci, High Tech Res Ctr, Jinan, Peoples R China

[10] Univ Wisconsin, Dept Hort, USDA ARS, Vegetable Crops Res Unit, Madison, WI 53706 USA

[11] Divers Arrays Technol, Canberra, ACT, Australia

[12] Wageningen UR Plant Breeding, Wageningen, Netherlands

[13] Chinese Acad Sci, Grad Univ, Beijing, Peoples R China

[14] Renmin Univ China, High Sch, Beijing, Peoples R China

[15] Gyeongsang Natl Univ, Div Appl Life Sci, BK21 & WCU Program, PMBBRC, Jinju, South Korea

[16] Gyeongsang Natl Univ, EB NCRC, Jinju, South Korea

[17] Natl Engn Res Ctr Vegetables, Beijing, Peoples R China

[18] Univ Aarhus, Inst Human Genet, Aarhus, Denmark

[19] Univ Copenhagen, Dept Biol, Copenhagen, Denmark

[20] S China Univ Technol, Guangzhou, Guangdong, Peoples R China

来源：

NATURE GENETICS | 2009年 / 41卷 / 12期

基金：

美国国家科学基金会; 中国国家自然科学基金;

关键词：

RICE GENOME; ETHYLENE BIOSYNTHESIS; ARABIDOPSIS-THALIANA; GENE; SEQUENCE; RESISTANCE; PLANTS; PHLOEM; EXPRESSION; DIVERSITY;

D O I：

10.1038/ng.475

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Cucumber is an economically important crop as well as a model system for sex determination studies and plant vascular biology. Here we report the draft genome sequence of Cucumis sativus var. sativus L., assembled using a novel combination of traditional Sanger and next-generation Illumina GA sequencing technologies to obtain 72.2-fold genome coverage. The absence of recent whole-genome duplication, along with the presence of few tandem duplications, explains the small number of genes in the cucumber. Our study establishes that five of the cucumber's seven chromosomes arose from fusions of ten ancestral chromosomes after divergence from Cucumis melo. The sequenced cucumber genome affords insight into traits such as its sex expression, disease resistance, biosynthesis of cucurbitacin and 'fresh green' odor. We also identify 686 gene clusters related to phloem function. The cucumber genome provides a valuable resource for developing elite cultivars and for studying the evolution and function of the plant vascular system.

引用

页码：1275 / U29

页数：9

共 78 条

[1] Nano scale proteomics revealed the presence of regulatory proteins including three FT-Like proteins in phloem and xylem saps from rice [J].

Aki, Toshihiko ;

Shigyo, Mikao ;

Nakano, Ryouhei ;

Yoneyama, Tadakatsu ;

Yanagisawa, Shuichi .

PLANT AND CELL PHYSIOLOGY, 2008, 49 (05) :767-790

[2]

Arumuganathan K, 1991, PLANT MOL BIOL REP, V9, P208, DOI DOI 10.1007/BF02672069

[3] Role of cucurbitacin C in resistance to spider mite (Tetranychus urticae) in cucumber (Cucumis sativus L.) [J].

Balkema-Boomstra, AG ;

Zijlstra, S ;

Verstappen, FWA ;

Inggamer, H ;

Mercke, PE ;

Jongsma, MA ;

Bouwmeester, HJ .

JOURNAL OF CHEMICAL ECOLOGY, 2003, 29 (01) :225-235

[4] Accurate whole human genome sequencing using reversible terminator chemistry [J].

Bentley, David R. ;

Balasubramanian, Shankar ;

Swerdlow, Harold P. ;

Smith, Geoffrey P. ;

Milton, John ;

Brown, Clive G. ;

Hall, Kevin P. ;

Evers, Dirk J. ;

Barnes, Colin L. ;

Bignell, Helen R. ;

Boutell, Jonathan M. ;

Bryant, Jason ;

Carter, Richard J. ;

Cheetham, R. Keira ;

Cox, Anthony J. ;

Ellis, Darren J. ;

Flatbush, Michael R. ;

Gormley, Niall A. ;

Humphray, Sean J. ;

Irving, Leslie J. ;

Karbelashvili, Mirian S. ;

Kirk, Scott M. ;

Li, Heng ;

Liu, Xiaohai ;

Maisinger, Klaus S. ;

Murray, Lisa J. ;

Obradovic, Bojan ;

Ost, Tobias ;

Parkinson, Michael L. ;

Pratt, Mark R. ;

Rasolonjatovo, Isabelle M. J. ;

Reed, Mark T. ;

Rigatti, Roberto ;

Rodighiero, Chiara ;

Ross, Mark T. ;

Sabot, Andrea ;

Sankar, Subramanian V. ;

Scally, Aylwyn ;

Schroth, Gary P. ;

Smith, Mark E. ;

Smith, Vincent P. ;

Spiridou, Anastassia ;

Torrance, Peta E. ;

Tzonev, Svilen S. ;

Vermaas, Eric H. ;

Walter, Klaudia ;

Wu, Xiaolin ;

Zhang, Lu ;

Alam, Mohammed D. ;

Anastasi, Carole .

NATURE, 2008, 456 (7218) :53-59

[5] GeneWise and genomewise [J].

Birney, E ;

Clamp, M ;

Durbin, R .

GENOME RESEARCH, 2004, 14 (05) :988-995

[6] Association of dwarfism and floral induction with a grape 'green revolution' mutation [J].

Boss, PK ;

Thomas, MR .

NATURE, 2002, 416 (6883) :847-850

[7] A conserved mutation in an ethylene biosynthesis enzyme leads to andromonoecy in melons [J].

Boualem, Adnane ;

Fergany, Mohamed ;

Fernandez, Ronan ;

Troadec, Christelle ;

Martin, Antoine ;

Morin, Halima ;

Sari, Marie-Agnes ;

Collin, Fabrice ;

Flowers, Jonathan M. ;

Pitrat, Michel ;

Purugganan, Michael D. ;

Dogimont, Catherine ;

Bendahmane, Abdelhafid .

SCIENCE, 2008, 321 (5890) :836-838

[8] Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events [J].

Bowers, JE ;

Chapman, BA ;

Rong, JK ;

Paterson, AH .

NATURE, 2003, 422 (6930) :433-438

[9] In touch: plant responses to mechanical stimuli [J].

Braam, J .

NEW PHYTOLOGIST, 2005, 165 (02) :373-389

[10] Production and stability of (E,Z)-2,6-nonadienal, the major flavor volatile of cucumbers [J].

Buescher, RH ;

Buescher, RW .

JOURNAL OF FOOD SCIENCE, 2001, 66 (02) :357-361

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