Using the Saccharomyces Genome Database (SGD) for analysis of protein similarities and structure

被引:49
作者
Chervitz, SA [1 ]
Hester, ET [1 ]
Ball, CA [1 ]
Dolinski, K [1 ]
Dwight, SS [1 ]
Harris, MA [1 ]
Juvik, G [1 ]
Malekian, A [1 ]
Roberts, S [1 ]
Roe, T [1 ]
Scafe, C [1 ]
Schroeder, M [1 ]
Sherlock, G [1 ]
Weng, S [1 ]
Zhu, Y [1 ]
Cherry, JM [1 ]
Botstein, D [1 ]
机构
[1] Stanford Univ, Dept Genet, Stanford, CA 94305 USA
关键词
D O I
10.1093/nar/27.1.74
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Saccharomyces Genome Database (SGD) collects and organizes information about the molecular biology and genetics of the yeast Saccharomyces cerevisiae. The latest protein structure and comparison tools available at SGD are presented here. With the completion of the yeast sequence and the Caenorhabditis elegans sequence soon to follow, comparison of proteins from complete eukaryotic proteomes will be an extremely powerful way to learn more about a particular protein's structure, its function, and its relationships with other proteins. SGD can be accessed through the World Wide Web at http://genome-www. stanford.edu/Saccharomyces/.
引用
收藏
页码:74 / 78
页数:5
相关论文
共 20 条
[1]   Protein data bank archives of three-dimensional macromolecular structures [J].
Abola, EE ;
Sussman, JL ;
Prilusky, J ;
Manning, NO .
MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 :556-571
[2]  
Altschul Stephen F., J MOL BIOL, V215, P403, DOI [10.1016/S0022-2836(05)80360-2, DOI 10.1016/S0022-2836(05)80360-2]
[3]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542
[4]   SGD:: Saccharomyces Genome Database [J].
Cherry, JM ;
Adler, C ;
Ball, C ;
Chervitz, SA ;
Dwight, SS ;
Hester, ET ;
Jia, YK ;
Juvik, G ;
Roe, T ;
Schroeder, M ;
Weng, SA ;
Botstein, D .
NUCLEIC ACIDS RESEARCH, 1998, 26 (01) :73-79
[5]  
DOLINSKI K, 1998, IN PRESS YEAST, V14
[6]   A database of macromolecular motions [J].
Gerstein, M ;
Krebs, W .
NUCLEIC ACIDS RESEARCH, 1998, 26 (18) :4280-4290
[7]  
GISH W, 1996, METHOD ENZYMOL, V266, P460
[8]   Cn3D: a new generation of three-dimensional molecular structure viewer [J].
Hogue, CWV .
TRENDS IN BIOCHEMICAL SCIENCES, 1997, 22 (08) :314-316
[9]   SCOP: A structural classification of proteins database [J].
Hubbard, TJP ;
Murzin, AG ;
Brenner, SE ;
Chothia, C .
NUCLEIC ACIDS RESEARCH, 1997, 25 (01) :236-239
[10]   PDBsum: a Web-based database of summaries and analyses of all PDB structures [J].
Laskowski, RA ;
Hutchinson, EG ;
Michie, AD ;
Wallace, AC ;
Jones, ML ;
Thornton, JM .
TRENDS IN BIOCHEMICAL SCIENCES, 1997, 22 (12) :488-490