Ensembl 2004

被引：138

作者：

Birney, E

Andrews, D

Bevan, P

Caccamo, M

Cameron, G

Chen, Y

Clarke, L

Coates, G

Cox, T

Cuff, J

Curwen, V

Cutts, T

Down, T

Durbin, R

Eyras, E

Fernandez-Suarez, XM

Gane, P

Gibbins, B

Gilbert, J

Hammond, M

Hotz, H

Iyer, V

Kahari, A

Jekosch, K

Kasprzyk, A

Keefe, D

Keenan, S

Lehvaslaiho, H

McVicker, G

Melsopp, C

Meidl, P

Mongin, E

Pettett, R

Potter, S

Proctor, G

Rae, M

Searle, S

Slater, G

Smedley, D

Smith, J

Spooner, W

Stabenau, A

Stalker, J

Storey, R

Ureta-Vidal, A

Woodwark, C

Clamp, M

Hubbard, T

机构：

[1] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England

[2] EBI, EMBL, Cambridge CB10 1SA, England

来源：

NUCLEIC ACIDS RESEARCH | 2004年 / 32卷

关键词：

D O I：

10.1093/nar/gkh038

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The Ensembi (http://www.ensembl.org/) database project provides a bioinformatics framework to organize biology around the sequences of large genomes. It is a comprehensive and integrated source of annotation of large genome sequences, available via interactive website, web services or flat files. As well as being one of the leading sources of genome annotation, Ensembi is an open source software engineering project to develop a portable system able to handle very large genomes and associated requirements. The facilities of the system range from sequence analysis to data storage and visualization and installations exist around the world both in companies and at academic sites. With a total of nine genome sequences available from Ensembl and more genomes to follow, recent developments have focused mainly on closer integration between genomes and external data.

引用

页码：D468 / D470

页数：3

共 8 条

[1] Databases and tools for browsing genomes [J].

Birney, E ;

Clamp, M ;

Hubbard, T .

ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2002, 3 :293-310

[2] Ensembl 2002: accommodating comparative genomics [J].

Clamp, M ;

Andrews, D ;

Barker, D ;

Bevan, P ;

Cameron, G ;

Chen, Y ;

Clark, L ;

Cox, T ;

Cuff, J ;

Curwen, V ;

Down, T ;

Durbin, R ;

Eyras, E ;

Gilbert, J ;

Hammond, M ;

Hubbard, T ;

Kasprzyk, A ;

Keefe, D ;

Lehvaslaiho, H ;

Iyer, V ;

Melsopp, C ;

Mongin, E ;

Pettett, R ;

Potter, S ;

Rust, A ;

Schmidt, E ;

Searle, S ;

Slater, G ;

Smith, J ;

Spooner, W ;

Stabenau, A ;

Stalker, J ;

Stupka, E ;

Ureta-Vidal, A ;

Vastrik, I ;

Birney, E .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :38-42

[3]

CLAMP M, 2003, IN PRESS BIOINFORMAT

[4] The Distributed Annotation System [J].

Dowell, Robin D. ;

Jokerst, Rodney M. ;

Day, Allen ;

Eddy, Sean R. ;

Stein, Lincoln .

BMC BIOINFORMATICS, 2001, 2 (1)

[5] The genome sequence of the malaria mosquito Anopheles gambiae [J].

Holt, RA ;

Subramanian, GM ;

Halpern, A ;

Sutton, GG ;

Charlab, R ;

Nusskern, DR ;

Wincker, P ;

Clark, AG ;

Ribeiro, JMC ;

Wides, R ;

Salzberg, SL ;

Loftus, B ;

Yandell, M ;

Majoros, WH ;

Rusch, DB ;

Lai, ZW ;

Kraft, CL ;

Abril, JF ;

Anthouard, V ;

Arensburger, P ;

Atkinson, PW ;

Baden, H ;

de Berardinis, V ;

Baldwin, D ;

Benes, V ;

Biedler, J ;

Blass, C ;

Bolanos, R ;

Boscus, D ;

Barnstead, M ;

Cai, S ;

Center, A ;

Chatuverdi, K ;

Christophides, GK ;

Chrystal, MA ;

Clamp, M ;

Cravchik, A ;

Curwen, V ;

Dana, A ;

Delcher, A ;

Dew, I ;

Evans, CA ;

Flanigan, M ;

Grundschober-Freimoser, A ;

Friedli, L ;

Gu, ZP ;

Guan, P ;

Guigo, R ;

Hillenmeyer, ME ;

Hladun, SL .

SCIENCE, 2002, 298 (5591) :129-+

[6] Biopipe: A flexible framework for protocol-based bioinformatics analysis [J].

Hoon, S ;

Ratnapu, KK ;

Chia, J ;

Kumarasamy, B ;

Xiao, JG ;

Clamp, M ;

Stabenau, A ;

Potter, S ;

Clarke, L ;

Stupka, E .

GENOME RESEARCH, 2003, 13 (08) :1904-1915

[7]

Lewis SE., 2002, Genome Biol, V3, DOI DOI 10.1186/GB-2002-3-12-RESEARCH0082

[8] Initial sequencing and comparative analysis of the mouse genome [J].

Waterston, RH ;

Lindblad-Toh, K ;

Birney, E ;

Rogers, J ;

Abril, JF ;

Agarwal, P ;

Agarwala, R ;

Ainscough, R ;

Alexandersson, M ;

An, P ;

Antonarakis, SE ;

Attwood, J ;

Baertsch, R ;

Bailey, J ;

Barlow, K ;

Beck, S ;

Berry, E ;

Birren, B ;

Bloom, T ;

Bork, P ;

Botcherby, M ;

Bray, N ;

Brent, MR ;

Brown, DG ;

Brown, SD ;

Bult, C ;

Burton, J ;

Butler, J ;

Campbell, RD ;

Carninci, P ;

Cawley, S ;

Chiaromonte, F ;

Chinwalla, AT ;

Church, DM ;

Clamp, M ;

Clee, C ;

Collins, FS ;

Cook, LL ;

Copley, RR ;

Coulson, A ;

Couronne, O ;

Cuff, J ;

Curwen, V ;

Cutts, T ;

Daly, M ;

David, R ;

Davies, J ;

Delehaunty, KD ;

Deri, J ;

Dermitzakis, ET .

NATURE, 2002, 420 (6915) :520-562

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