Vive la difference: biogenesis and evolution of microRNAs in plants and animals

被引：344

作者：

Axtell, Michael J. ^{[1
]}

Westholm, Jakub O. ^{[2
]}

Lai, Eric C. ^{[2
]}

机构：

[1] Penn State Univ, Dept Biol, Mueller Lab 208, University Pk, PA 16802 USA

[2] Sloan Kettering Inst, Dept Dev Biol, New York, NY 10065 USA

来源：

GENOME BIOLOGY | 2011年 / 12卷 / 04期

关键词：

UTR SEQUENCE MOTIF; SMALL RNAS; POSTTRANSCRIPTIONAL REGULATION; TRANSLATIONAL INHIBITION; DROSOPHILA MICRORNAS; TARGET RECOGNITION; ARABIDOPSIS-LYRATA; GENE-EXPRESSION; PATHWAY; MIRNA;

D O I：

10.1186/gb-2011-12-4-221

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

MicroRNAs are pervasive in both plants and animals, but many aspects of their biogenesis, function and evolution differ. We reveal how these differences contribute to characteristic features of microRNA evolution in the two kingdoms.

引用

页数：13

共 137 条

[1] Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development [J].

Aboobaker, AA ;

Tomancak, P ;

Patel, N ;

Rubin, GM ;

Lai, EC .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (50) :18017-18022

[2] Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome [J].

Addo-Quaye, Charles ;

Eshoo, Tifani W. ;

Bartel, David P. ;

Axtell, Michael J. .

CURRENT BIOLOGY, 2008, 18 (10) :758-762

[3] Sliced microRNA targets and precise loop-first processing of MIR319 hairpins revealed by analysis of the Physcomitrella patens degradome [J].

Addo-Quaye, Charles ;

Snyder, Jo Ann ;

Park, Yong Bum ;

Li, Yong-Fang ;

Sunkar, Ramanjulu ;

Axtell, Michael J. .

RNA, 2009, 15 (12) :2112-2121

[4] Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana [J].

Allen, E ;

Xie, ZX ;

Gustafson, AM ;

Sung, GH ;

Spatafora, JW ;

Carrington, JC .

NATURE GENETICS, 2004, 36 (12) :1282-1290

[5] A uniform system for microRNA annotation [J].

Ambros, V ;

Bartel, B ;

Bartel, DP ;

Burge, CB ;

Carrington, JC ;

Chen, XM ;

Dreyfuss, G ;

Eddy, SR ;

Griffiths-Jones, S ;

Marshall, M ;

Matzke, M ;

Ruvkun, G ;

Tuschl, T .

RNA, 2003, 9 (03) :277-279

[6] Target RNA-Directed Trimming and Tailing of Small Silencing RNAs [J].

Ameres, Stefan L. ;

Horwich, Michael D. ;

Hung, Jui-Hung ;

Xu, Jia ;

Ghildiyal, Megha ;

Weng, Zhiping ;

Zamore, Phillip D. .

SCIENCE, 2010, 328 (5985) :1534-1539

[7] Common functions for diverse small RNAs of land plants [J].

Axtell, Michael J. ;

Snyder, Jo Ann ;

Bartell, David P. .

PLANT CELL, 2007, 19 (06) :1750-1769

[8] A two-hit trigger for siRNA biogenesis in plants [J].

Axtell, Michael J. ;

Jan, Calvin ;

Rajagopalan, Ramya ;

Bartel, David P. .

CELL, 2006, 127 (03) :565-577

[9] Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs [J].

Babiarz, Joshua E. ;

Ruby, J. Graham ;

Wang, Yangming ;

Bartel, David P. ;

Blelloch, Robert .

GENES & DEVELOPMENT, 2008, 22 (20) :2773-2785

[10] The impact of microRNAs on protein output [J].

Baek, Daehyun ;

Villen, Judit ;

Shin, Chanseok ;

Camargo, Fernando D. ;

Gygi, Steven P. ;

Bartel, David P. .

NATURE, 2008, 455 (7209) :64-U38

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