opm: an R package for analysing OmniLog® phenotype microarray data

被引：176

作者：

Vaas, Lea A. I. ^{[1
]}

Sikorski, Johannes ^{[2
]}

Hofner, Benjamin ^{[3
]}

Fiebig, Anne ^{[2
]}

Buddruhs, Nora ^{[2
]}

Klenk, Hans-Peter ^{[2
]}

Goeker, Markus ^{[2
]}

机构：

[1] CBS KNAW Fungal Biodivers Ctr, NL-3584 CT Utrecht, Netherlands

[2] Leibniz Inst DSMZ German Collect Microorganisms &, D-38124 Braunschweig, Germany

[3] Univ Erlangen Nurnberg, Inst Med Informat Biometrie & Epidemiol, D-91054 Erlangen, Germany

来源：

BIOINFORMATICS | 2013年 / 29卷 / 14期

关键词：

INFERENCE; PROGRAM;

D O I：

10.1093/bioinformatics/btt291

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

opm is an R package designed to analyse multidimensional OmniLog (R) phenotype microarray ( PM) data. opm provides management, visualization and statistical analysis of PM data, including curve-parameter estimation and discretization, dedicated and customizable plots, metadata management, automated generation of textual and tabular reports, mapping of substrates to databases, batch conversion of files and export to phylogenetic software in the YAML markup language.

引用

页码：1823 / 1824

页数：2

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