Circular RNAs are miRNA sponges and can be used as a new class of biomarker

被引:654
作者
Kulcheski, Franceli Rodrigues [1 ,2 ]
Christoff, Ana Paula [3 ]
Margis, Rogerio [1 ,2 ]
机构
[1] Univ Fed Rio Grande do Sul, Ctr Biotecnol, Programa Posgrad Biol Celular & Mol, Porto Alegre, RS, Brazil
[2] Univ Fed Rio Grande do Sul, Dept Biofis, Porto Alegre, RS, Brazil
[3] Spin LTDA EPP, Porto Alegre, RS, Brazil
关键词
circRNA; microRNA; Cancer; Human disease; Diagnostic; Gene expression; LUNG-CANCER CELLS; MESSENGER-RNA; MICRORNA BIOGENESIS; SPLICE JUNCTIONS; GROWTH; EXPRESSION; RECEPTOR; SEQ; IDENTIFICATION; METASTASIS;
D O I
10.1016/j.jbiotec.2016.09.011
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 [微生物学]; 090105 [作物生产系统与生态工程];
摘要
Circular RNAs (circRNAs) are a class of non-coding RNAs (ncRNAs) that are involved in transcriptional and posttranscriptional gene expression regulation. The development of deep sequencing of ribosomal RNA (rRNA)-depleted RNA libraries, associated with improved computational tools, has provided the identification of several new circRNAs in all sorts of organisms, from protists, plants and fungi to animals. Recently, it was discovered that endogenous circRNAs can work as microRNA (miRNA) sponges. This means that the circRNAs bind to miRNAs and consequently repress their function, providing a new model of action for this class of ncRNA, as well as indicating another mechanism that regulates miRNA activity. As miRNAs control a large set of biological processes, circRNA sponge activity will also affect these pathways. Several studies have associated miRNA sponges with human diseases, including osteoarthritis, diabetes, neurodegenerative pathologies and several types of cancer. Additionally, high stability, abundance and tissue-specific expression patterns make circRNA sponges very attractive for clinical research. Herein, we review the biogenesis, properties and function of endogenous circRNA sponges, with a special focus on those related to human cancer. A list of web tools available for the study of circRNAs is also given. Additionally, we discuss the possibility of using circRNAs as molecular markers for the diagnosis of diseases. (C) 2016 Elsevier B.V. All rights reserved.
引用
收藏
页码:42 / 51
页数:10
相关论文
共 106 条
[1]   Global and unbiased detection of splice junctions from RNA-seq data [J].
Ameur, Adam ;
Wetterbom, Anna ;
Feuk, Lars ;
Gyllensten, Ulf .
GENOME BIOLOGY, 2010, 11 (03)
[2]  
Andreeva K, 2015, ADV BIOSCI BIOTECHNO, V6, P433, DOI [10.42361abb.2014.66043, DOI 10.4236/ABB.2015.66043]
[3]   miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis [J].
Andres-Leon, Eduardo ;
Nunez-Torres, Rocio ;
Rojas, Ana M. .
SCIENTIFIC REPORTS, 2016, 6
[4]  
[Anonymous], EVID BASED COMP ALTE
[5]  
[Anonymous], ONCOL REP
[6]  
[Anonymous], RNA BIOL
[7]   circRNA Biogenesis Competes with Pre-mRNA Splicing [J].
Ashwal-Fluss, Reut ;
Meyer, Markus ;
Pamudurti, Nagarjuna Reddy ;
Ivanov, Andranik ;
Bartok, Osnat ;
Hanan, Mor ;
Evantal, Naveh ;
Memczak, Sebastian ;
Rajewsky, Nikolaus ;
Kadener, Sebastian .
MOLECULAR CELL, 2014, 56 (01) :55-66
[8]   Detection of splice junctions from paired-end RNA-seq data by SpliceMap [J].
Au, Kin Fai ;
Jiang, Hui ;
Lin, Lan ;
Xing, Yi ;
Wong, Wing Hung .
NUCLEIC ACIDS RESEARCH, 2010, 38 (14) :4570-4578
[9]   Circulating microRNA expression profiles in ovarian cancer [J].
Ayaz, L. ;
Cayan, F. ;
Balci, S. ;
Gorur, A. ;
Akbayir, S. ;
Yaroglu, H. Yildirim ;
Unal, N. Dogruer ;
Tamer, L. .
JOURNAL OF OBSTETRICS AND GYNAECOLOGY, 2014, 34 (07) :620-624
[10]   The Landscape of MicroRNA, Piwi-Interacting RNA, and Circular RNA in Human Saliva [J].
Bahn, Jae Hoon ;
Zhang, Qing ;
Li, Feng ;
Chan, Tak-Ming ;
Lin, Xianzhi ;
Kim, Yong ;
Wong, David T. W. ;
Xiao, Xinshu .
CLINICAL CHEMISTRY, 2015, 61 (01) :221-230