PEDANT covers all complete RefSeq genomes

被引：94

作者：

Walter, Mathias C. ^{[1
]}

Rattei, Thomas ^{[2
]}

Arnold, Roland ^{[2
]}

Gueldener, Ulrich ^{[1
]}

Muensterkoetter, Martin ^{[1
]}

Nenova, Karamfilka ^{[1
]}

Kastenmueller, Gabi ^{[1
]}

Tischler, Patrick ^{[2
]}

Woelling, Andreas ^{[3
]}

Volz, Andreas ^{[3
]}

Pongratz, Norbert ^{[3
]}

Jost, Ralf ^{[3
]}

Mewes, Hans-Werner ^{[1
,2
]}

Frishman, Dmitrij ^{[1
,2
]}

机构：

[1] German Res Ctr Environm Hlth GmbH, Helmholtz Zentrum Munchen, Inst Bioinformat & Syst Biol, D-85764 Neuherberg, Germany

[2] Tech Univ Munich, Wissensch Zentrum Weihenstephan, Dept Genome Oriented Bioinformat, D-85350 Freising Weihenstephan, Germany

[3] Biomax Informat AG, D-82152 Martinsried, Germany

来源：

NUCLEIC ACIDS RESEARCH | 2009年 / 37卷

关键词：

DATABASE; PROTEINS; SEQUENCE; PREDICTION; RESOURCE;

D O I：

10.1093/nar/gkn749

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

070307 [化学生物学]; 071010 [生物化学与分子生物学];

摘要：

The PEDANT genome database provides exhaustive annotation of nearly 3000 publicly available eukaryotic, eubacterial, archaeal and viral genomes with more than 4.5 million proteins by a broad set of bioinformatics algorithms. In particular, all completely sequenced genomes from the NCBI's Reference Sequence collection (RefSeq) are covered. The PEDANT processing pipeline has been sped up by an order of magnitude through the utilization of pre-calculated similarity information stored in the similarity matrix of proteins (SIMAP) database, making it possible to process newly sequenced genomes immediately as they become available. PEDANT is freely accessible to academic users at http://pedant.gsf.de. For programmatic access Web Services are available at http://pedant.gsf.de/webservices.jsp.

引用

页码：D408 / D411

页数：4

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