Split Decomposition: A New and Useful Approach to Phylogenetic Analysis of Distance Data

被引:394
作者
Bandelt, Hans-Juergen [1 ]
Dress, Andreas W. M. [2 ]
机构
[1] Univ Hamburg, Math Seminar, D-2000 Hamburg 13, Germany
[2] Univ Bielefeld, Fak Math, D-4800 Bielefeld, Germany
关键词
D O I
10.1016/1055-7903(92)90021-8
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In order to analyze the structure inherent to a matrix of dissimilarities (such as evolutionary distances) we propose to use a new technique called split decomposition. This method accurately dissects the given dissimilarity measure as a sum of elementary "split" metrics plus a (small) residue. The split summands identify related groups which are susceptible to further interpretation when casted against the available biological information. Reanalysis of previously published ribosomal RNA data sets using split decomposition illustrate the potential of this approach. (C) 1992 Academic press, Inc.
引用
收藏
页码:242 / 252
页数:11
相关论文
共 20 条
[1]   A CANONICAL DECOMPOSITION-THEORY FOR METRICS ON A FINITE-SET [J].
BANDELT, HJ ;
DRESS, AWM .
ADVANCES IN MATHEMATICS, 1992, 92 (01) :47-105
[2]  
BANDELT HJ, 1989, B MATH BIOL, V51, P133, DOI 10.1016/S0092-8240(89)80053-9
[3]  
BANDELT HJ, 1992, L1 STATISTICAL ANAL, P305
[4]  
DOPAZO J, 1990, 90037 U BIEL
[6]   CLONING AND DNA-SEQUENCE ANALYSIS OF THE SERC-AROA OPERON FROM SALMONELLA-GALLINARUM - EVOLUTIONARY RELATIONSHIPS BETWEEN THE PROKARYOTIC AND EUKARYOTIC AROA-ENCODED ENZYMES [J].
GRIFFIN, HG ;
GRIFFIN, AM .
JOURNAL OF GENERAL MICROBIOLOGY, 1991, 137 :113-121
[7]   THE RELATIONSHIP BETWEEN SIMPLE EVOLUTIONARY TREE MODELS AND OBSERVABLE SEQUENCE DATA [J].
HENDY, MD .
SYSTEMATIC ZOOLOGY, 1989, 38 (04) :310-321
[8]  
HENDY MD, 1991, SPECTRAL ANAL PHYLOG
[9]   PHYLOGENETIC POSITION OF SOME CHLORELLA SPECIES WITHIN THE CHLOROCOCCALES BASED UPON COMPLETE SMALL-SUBUNIT RIBOSOMAL-RNA SEQUENCES [J].
HUSS, VAR ;
SOGIN, ML .
JOURNAL OF MOLECULAR EVOLUTION, 1990, 31 (05) :432-442
[10]   SECONDARY STRUCTURAL ELEMENTS EXCLUSIVE TO THE SEQUENCES FLANKING RIBOSOMAL-RNAS LEND SUPPORT TO THE MONOPHYLETIC NATURE OF THE ARCHAEBACTERIA [J].
KJEMS, J ;
GARRETT, RA .
JOURNAL OF MOLECULAR EVOLUTION, 1990, 31 (01) :25-32